RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 NUDT16Q96DE0 195 aaKnown RBP17.37■□□□□ 0.37
SMARCB1-203ENST00000407082 POLR3GLQ9BT43 218 aa17.37■□□□□ 0.37
SMARCB1-203ENST00000407082 BCL11BQ9C0K0 894 aaPredicted RBP17.37■□□□□ 0.37
SMARCB1-203ENST00000407082 SBNO2Q9Y2G9 1366 aa17.37■□□□□ 0.37
SMARCB1-203ENST00000407082 TULP4Q9NRJ4 1543 aa17.37■□□□□ 0.37
SMARCB1-203ENST00000407082 SRPK2P78362 688 aaKnown RBP17.36■□□□□ 0.37
SMARCB1-203ENST00000407082 PDGFDQ9GZP0 370 aaPredicted RBP17.36■□□□□ 0.37
SMARCB1-203ENST00000407082 ATF5Q9Y2D1 282 aaPredicted RBP17.36■□□□□ 0.37
SMARCB1-203ENST00000407082 ABTB2Q8N961 1025 aa17.35■□□□□ 0.37
SMARCB1-203ENST00000407082 ZBED9Q6R2W3 1325 aa17.35■□□□□ 0.37
SMARCB1-203ENST00000407082 CRYBG1Q9Y4K1 1723 aa17.35■□□□□ 0.37
SMARCB1-203ENST00000407082 TMF1P82094 1093 aa17.34■□□□□ 0.37
SMARCB1-203ENST00000407082 FKBP8Q14318 412 aa17.34■□□□□ 0.37
SMARCB1-203ENST00000407082 CABP2Q9NPB3 220 aa17.34■□□□□ 0.37
SMARCB1-203ENST00000407082 CDCA8Q53HL2 280 aa17.33■□□□□ 0.36
SMARCB1-203ENST00000407082 ANO8Q9HCE9 1232 aaPredicted RBP17.33■□□□□ 0.36
SMARCB1-203ENST00000407082 THRAP3Q9Y2W1 955 aaKnown RBP17.33■□□□□ 0.36
SMARCB1-203ENST00000407082 FAM9BQ8IZU0 186 aa17.32■□□□□ 0.36
SMARCB1-203ENST00000407082 ACEP12821 1306 aa17.31■□□□□ 0.36
SMARCB1-203ENST00000407082 BRD4O60885 1362 aaPredicted RBP17.3■□□□□ 0.36
SMARCB1-203ENST00000407082 PHRF1Q9P1Y6 1649 aaKnown RBP17.3■□□□□ 0.36
SMARCB1-203ENST00000407082 PLSCR1O15162 318 aa17.3■□□□□ 0.36
SMARCB1-203ENST00000407082 C1QTNF8P60827 252 aa17.3■□□□□ 0.36
SMARCB1-203ENST00000407082 PTF1AQ7RTS3 328 aa17.3■□□□□ 0.36
SMARCB1-203ENST00000407082 MYBBP1AQ9BQG0 1328 aaKnown RBP17.29■□□□□ 0.36
SMARCB1-203ENST00000407082 DDB1Q16531 1140 aa17.29■□□□□ 0.36
SMARCB1-203ENST00000407082 TMC1Q8TDI8 760 aa17.29■□□□□ 0.36
SMARCB1-203ENST00000407082 FHDC1Q9C0D6 1143 aaPredicted RBP17.29■□□□□ 0.36
SMARCB1-203ENST00000407082 CCDC61Q9Y6R9 512 aa17.29■□□□□ 0.36
SMARCB1-203ENST00000407082 NRKQ7Z2Y5 1582 aa17.28■□□□□ 0.36
SMARCB1-203ENST00000407082 PUS7Q96PZ0 661 aaKnown RBP17.28■□□□□ 0.36
SMARCB1-203ENST00000407082 SYT17Q9BSW7 474 aa17.28■□□□□ 0.36
SMARCB1-203ENST00000407082 STK32BQ9NY57 414 aa17.28■□□□□ 0.36
SMARCB1-203ENST00000407082 ATP7BP35670 1465 aa17.28■□□□□ 0.36
SMARCB1-203ENST00000407082 OVOS2A0A0G2JMS6 1433 aa17.28■□□□□ 0.36
SMARCB1-203ENST00000407082 OVOS2A0A0J9YW53 1432 aa17.28■□□□□ 0.36
SMARCB1-203ENST00000407082 OVOS2Q6IE36 1432 aa17.28■□□□□ 0.36
SMARCB1-203ENST00000407082 GCP02774 474 aa17.27■□□□□ 0.36
SMARCB1-203ENST00000407082 PTGER2P43116 358 aa17.27■□□□□ 0.36
SMARCB1-203ENST00000407082 NLRP13Q86W25 1043 aa17.27■□□□□ 0.36
SMARCB1-203ENST00000407082 TOM1L2Q6ZVM7 507 aa17.26■□□□□ 0.35
SMARCB1-203ENST00000407082 PROM2Q8N271 834 aa17.26■□□□□ 0.35
SMARCB1-203ENST00000407082 IFFO2Q5TF58 517 aa17.25■□□□□ 0.35
SMARCB1-203ENST00000407082 CABP1Q9NZU7 370 aa17.25■□□□□ 0.35
SMARCB1-203ENST00000407082 CPDO75976 1380 aa17.24■□□□□ 0.35
SMARCB1-203ENST00000407082 ITSN1Q15811 1721 aa17.24■□□□□ 0.35
SMARCB1-203ENST00000407082 MYOM1P52179 1685 aa17.23■□□□□ 0.35
SMARCB1-203ENST00000407082 CRB1P82279 1406 aa17.23■□□□□ 0.35
SMARCB1-203ENST00000407082 PPIP5K1Q6PFW1 1433 aa17.23■□□□□ 0.35
SMARCB1-203ENST00000407082 PLEKHG3A1L390 1219 aa17.23■□□□□ 0.35
SMARCB1-203ENST00000407082 CCDC184Q52MB2 194 aa17.23■□□□□ 0.35
SMARCB1-203ENST00000407082 SLC15A2Q16348 729 aa17.22■□□□□ 0.35
SMARCB1-203ENST00000407082 GPR162Q16538 588 aa17.22■□□□□ 0.35
SMARCB1-203ENST00000407082 TXNRD1Q16881 649 aa17.22■□□□□ 0.35
SMARCB1-203ENST00000407082 MARCH10Q8NA82 808 aaPredicted RBP17.22■□□□□ 0.35
SMARCB1-203ENST00000407082 COL5A2P05997 1499 aaPredicted RBP17.22■□□□□ 0.35
SMARCB1-203ENST00000407082 PARP4Q9UKK3 1724 aaKnown RBP17.21■□□□□ 0.35
SMARCB1-203ENST00000407082 CASZ1Q86V15 1759 aa17.21■□□□□ 0.35
SMARCB1-203ENST00000407082 POLR3AO14802 1390 aaPredicted RBP17.21■□□□□ 0.35
SMARCB1-203ENST00000407082 INSRP06213 1382 aa17.21■□□□□ 0.35
SMARCB1-203ENST00000407082 MTFR1LQ9H019 292 aa17.21■□□□□ 0.35
SMARCB1-203ENST00000407082 SLC12A5Q9H2X9 1139 aa17.21■□□□□ 0.35
SMARCB1-203ENST00000407082 USP19O94966 1318 aa17.21■□□□□ 0.34
SMARCB1-203ENST00000407082 NLRP6P59044 892 aa17.2■□□□□ 0.34
SMARCB1-203ENST00000407082 KLHL34Q8N239 644 aa17.2■□□□□ 0.34
SMARCB1-203ENST00000407082 ARXQ96QS3 562 aa17.2■□□□□ 0.34
SMARCB1-203ENST00000407082 LMO7Q8WWI1 1683 aa17.2■□□□□ 0.34
SMARCB1-203ENST00000407082 PNISRQ8TF01 805 aaKnown RBP17.19■□□□□ 0.34
SMARCB1-203ENST00000407082 TOPAZ1Q8N9V7 1692 aa17.18■□□□□ 0.34
SMARCB1-203ENST00000407082 GIGYF1O75420 1035 aaPredicted RBP17.18■□□□□ 0.34
SMARCB1-203ENST00000407082 CSB-PGBD3P0DP91 1061 aa17.18■□□□□ 0.34
SMARCB1-203ENST00000407082 SBF2Q86WG5 1849 aa17.18■□□□□ 0.34
SMARCB1-203ENST00000407082 SMG6Q86US8 1419 aaKnown RBP17.17■□□□□ 0.34
SMARCB1-203ENST00000407082 ZNF692Q9BU19 519 aaPredicted RBP17.17■□□□□ 0.34
SMARCB1-203ENST00000407082 PEAK1Q9H792 1746 aa17.17■□□□□ 0.34
SMARCB1-203ENST00000407082 CHD4Q14839 1912 aa17.16■□□□□ 0.34
SMARCB1-203ENST00000407082 EXOC5O00471 708 aa17.16■□□□□ 0.34
SMARCB1-203ENST00000407082 HDGFL2Q7Z4V5 671 aaPredicted RBP17.16■□□□□ 0.34
SMARCB1-203ENST00000407082 TERF2IPQ9NYB0 399 aa17.16■□□□□ 0.34
SMARCB1-203ENST00000407082 RGPD3A6NKT7 1758 aaPredicted RBP17.15■□□□□ 0.34
SMARCB1-203ENST00000407082 RGPD4Q7Z3J3 1758 aa17.15■□□□□ 0.34
SMARCB1-203ENST00000407082 SOX12O15370 315 aa17.15■□□□□ 0.34
SMARCB1-203ENST00000407082 CDCA7Q9BWT1 371 aaPredicted RBP17.15■□□□□ 0.34
SMARCB1-203ENST00000407082 AXIN2Q9Y2T1 843 aa17.15■□□□□ 0.34
SMARCB1-203ENST00000407082 AATKQ6ZMQ8 1374 aa17.15■□□□□ 0.34
SMARCB1-203ENST00000407082 LRRC37A3O60309 1634 aa17.14■□□□□ 0.33
SMARCB1-203ENST00000407082 PER1O15534 1290 aaPredicted RBP17.14■□□□□ 0.33
SMARCB1-203ENST00000407082 ACSBG1Q96GR2 724 aa17.13■□□□□ 0.33
SMARCB1-203ENST00000407082 SGIP1Q9BQI5 828 aa17.13■□□□□ 0.33
SMARCB1-203ENST00000407082 NUDCQ9Y266 331 aa17.13■□□□□ 0.33
SMARCB1-203ENST00000407082 WDR17Q8IZU2 1322 aa17.13■□□□□ 0.33
SMARCB1-203ENST00000407082 CPSF1Q10570 1443 aaKnown RBP17.13■□□□□ 0.33
SMARCB1-203ENST00000407082 PANK3Q9H999 370 aa17.12■□□□□ 0.33
SMARCB1-203ENST00000407082 PPP4R2Q9NY27 417 aa17.12■□□□□ 0.33
SMARCB1-203ENST00000407082 KNSTRNQ9Y448 316 aa17.12■□□□□ 0.33
SMARCB1-203ENST00000407082 A0A1W2PP64 1363 aa17.11■□□□□ 0.33
SMARCB1-203ENST00000407082 CD163L1Q9NR16 1453 aa17.11■□□□□ 0.33
SMARCB1-203ENST00000407082 ANKRD36BQ8N2N9 1353 aa17.1■□□□□ 0.33
SMARCB1-203ENST00000407082 USP6P35125 1406 aa17.1■□□□□ 0.33
SMARCB1-203ENST00000407082 CARD10Q9BWT7 1032 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms