RNA–Protein interactions for RNA: ENST00000400186.7

CSMD1-202, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 10,938 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-202ENST00000400186 SPATA32Q96LK8 384 aa11.32□□□□□ -0.6
CSMD1-202ENST00000400186 TTC39AQ5SRH9 613 aa11.32□□□□□ -0.6
CSMD1-202ENST00000400186 LARP1BQ659C4 914 aaKnown RBP11.32□□□□□ -0.6
CSMD1-202ENST00000400186 GNL3LQ9NVN8 582 aaKnown RBP11.32□□□□□ -0.6
CSMD1-202ENST00000400186 ARHGAP5Q13017 1502 aa11.32□□□□□ -0.6
CSMD1-202ENST00000400186 KIAA1328Q86T90 577 aa11.32□□□□□ -0.6
CSMD1-202ENST00000400186 PDCL2Q8N4E4 241 aa11.32□□□□□ -0.6
CSMD1-202ENST00000400186 SLC26A8Q96RN1 970 aa11.32□□□□□ -0.6
CSMD1-202ENST00000400186 TANGO6Q9C0B7 1094 aa11.32□□□□□ -0.6
CSMD1-202ENST00000400186 CDKL5O76039 1030 aa11.32□□□□□ -0.6
CSMD1-202ENST00000400186 NLRP2Q9NX02 1062 aa11.32□□□□□ -0.6
CSMD1-202ENST00000400186 TCP11L2Q8N4U5 519 aa11.31□□□□□ -0.6
CSMD1-202ENST00000400186 CFAP45Q9UL16 551 aa11.31□□□□□ -0.6
CSMD1-202ENST00000400186 BACH2Q9BYV9 841 aa11.31□□□□□ -0.6
CSMD1-202ENST00000400186 SEPT11Q9NVA2 429 aaKnown RBP11.31□□□□□ -0.6
CSMD1-202ENST00000400186 PDCL3Q9H2J4 239 aa11.31□□□□□ -0.6
CSMD1-202ENST00000400186 WASHC2AQ641Q2 1341 aa11.31□□□□□ -0.6
CSMD1-202ENST00000400186 CABP2Q9NPB3 220 aa11.31□□□□□ -0.6
CSMD1-202ENST00000400186 CIZ1Q9ULV3 898 aaPredicted RBP11.31□□□□□ -0.6
CSMD1-202ENST00000400186 KIF2AO00139 706 aaPredicted RBP11.31□□□□□ -0.6
CSMD1-202ENST00000400186 NUP62CLQ9H1M0 184 aa11.31□□□□□ -0.6
CSMD1-202ENST00000400186 ZHX3Q9H4I2 956 aa11.31□□□□□ -0.6
CSMD1-202ENST00000400186 EPB41L2O43491 1005 aaKnown RBP11.3□□□□□ -0.6
CSMD1-202ENST00000400186 PODXL2Q9NZ53 605 aa11.3□□□□□ -0.6
CSMD1-202ENST00000400186 CDCA7LQ96GN5 454 aa11.3□□□□□ -0.6
CSMD1-202ENST00000400186 UPF3BQ9BZI7 483 aaKnown RBP11.3□□□□□ -0.6
CSMD1-202ENST00000400186 MTHFSP49914 203 aa11.3□□□□□ -0.6
CSMD1-202ENST00000400186 CCDC69A6NI79 296 aa11.3□□□□□ -0.6
CSMD1-202ENST00000400186 MEX3CQ5U5Q3 659 aaKnown RBP11.3□□□□□ -0.6
CSMD1-202ENST00000400186 CCT4P50991 539 aaKnown RBP11.3□□□□□ -0.6
CSMD1-202ENST00000400186 ARHGAP29Q52LW3 1261 aa11.3□□□□□ -0.6
CSMD1-202ENST00000400186 NACAP1Q9BZK3 213 aa11.3□□□□□ -0.6
CSMD1-202ENST00000400186 UBXN4Q92575 508 aa11.3□□□□□ -0.6
CSMD1-202ENST00000400186 GAS2L2Q8NHY3 880 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 SYCE3A1L190 88 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 GGNBP2Q9H3C7 697 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 ATP2B2Q01814 1243 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 NUTM2GQ5VZR2 741 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 MAP9Q49MG5 647 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 SRCIN1Q9C0H9 1055 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 CCDC148Q8NFR7 591 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 LRRC9Q6ZRR7 1453 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 CRACR2AQ9BSW2 395 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 MCM4P33991 863 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 MAP3K11Q16584 847 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 GIMAP7Q8NHV1 300 aa11.29□□□□□ -0.6
CSMD1-202ENST00000400186 ZSCAN30Q86W11 494 aa11.28□□□□□ -0.6
CSMD1-202ENST00000400186 CCDC158Q5M9N0 1113 aa11.28□□□□□ -0.6
CSMD1-202ENST00000400186 TWISTNBQ3B726 338 aaPredicted RBP11.28□□□□□ -0.6
CSMD1-202ENST00000400186 NOL7Q9UMY1 257 aaKnown RBP11.28□□□□□ -0.6
CSMD1-202ENST00000400186 SFPQP23246 707 aaKnown RBP eCLIP11.28□□□□□ -0.6
CSMD1-202ENST00000400186 TMCO3Q6UWJ1 677 aa11.28□□□□□ -0.6
CSMD1-202ENST00000400186 PTPRGP23470 1445 aa11.28□□□□□ -0.6
CSMD1-202ENST00000400186 PRKAR2BP31323 418 aa11.28□□□□□ -0.6
CSMD1-202ENST00000400186 RUSC2Q8N2Y8 1516 aa11.28□□□□□ -0.6
CSMD1-202ENST00000400186 TAF4BQ92750 862 aa11.28□□□□□ -0.6
CSMD1-202ENST00000400186 JPH4Q96JJ6 628 aa11.27□□□□□ -0.6
CSMD1-202ENST00000400186 SMTNL1A8MU46 457 aa11.27□□□□□ -0.6
CSMD1-202ENST00000400186 FILIP1Q7Z7B0 1213 aa11.27□□□□□ -0.6
CSMD1-202ENST00000400186 TSR2Q969E8 191 aaKnown RBP11.27□□□□□ -0.6
CSMD1-202ENST00000400186 PPP2R1AP30153 589 aa11.27□□□□□ -0.6
CSMD1-202ENST00000400186 CCDC91Q7Z6B0 441 aa11.27□□□□□ -0.61
CSMD1-202ENST00000400186 CNNM1Q9NRU3 951 aa11.27□□□□□ -0.61
CSMD1-202ENST00000400186 MAP4K4O95819 1239 aaPredicted RBP11.27□□□□□ -0.61
CSMD1-202ENST00000400186 JAKMIP3Q5VZ66 844 aa11.27□□□□□ -0.61
CSMD1-202ENST00000400186 PDRG1Q9NUG6 133 aa11.27□□□□□ -0.61
CSMD1-202ENST00000400186 SHTN1A0MZ66 631 aa11.27□□□□□ -0.61
CSMD1-202ENST00000400186 STK11IPQ8N1F8 1099 aa11.27□□□□□ -0.61
CSMD1-202ENST00000400186 EIF5P55010 431 aaKnown RBP11.27□□□□□ -0.61
CSMD1-202ENST00000400186 BLOC1S2Q6QNY1 142 aa11.27□□□□□ -0.61
CSMD1-202ENST00000400186 NUP133Q8WUM0 1156 aa11.27□□□□□ -0.61
CSMD1-202ENST00000400186 WDR97A6NE52 1622 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 CHD1LQ86WJ1 897 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 ANKRD50Q9ULJ7 1429 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 CFAP100Q494V2 611 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 STAC3Q96MF2 364 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 SIL1Q9H173 461 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 ZNF397Q8NF99 534 aaPredicted RBP11.26□□□□□ -0.61
CSMD1-202ENST00000400186 ERICH3Q5RHP9 1530 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 EXOSC9Q06265 439 aaKnown RBP11.26□□□□□ -0.61
CSMD1-202ENST00000400186 PPP6R1Q9UPN7 881 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 CASTP20810 708 aaKnown RBP11.26□□□□□ -0.61
CSMD1-202ENST00000400186 ATF3P18847 181 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 AACSQ86V21 672 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 KIF18AQ8NI77 898 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 GBP3Q9H0R5 595 aa11.26□□□□□ -0.61
CSMD1-202ENST00000400186 MVPQ14764 893 aaKnown RBP11.25□□□□□ -0.61
CSMD1-202ENST00000400186 ZSCAN31Q96LW9 406 aaPredicted RBP11.25□□□□□ -0.61
CSMD1-202ENST00000400186 JAKMIP1Q96N16 626 aaKnown RBP11.25□□□□□ -0.61
CSMD1-202ENST00000400186 GOLGA6L10A0A0M3HER8 536 aa11.25□□□□□ -0.61
CSMD1-202ENST00000400186 PDIA4P13667 645 aaKnown RBP11.25□□□□□ -0.61
CSMD1-202ENST00000400186 DESP17661 470 aa11.25□□□□□ -0.61
CSMD1-202ENST00000400186 SSBP05455 408 aaKnown RBP eCLIP11.25□□□□□ -0.61
CSMD1-202ENST00000400186 PTPN14Q15678 1187 aa11.25□□□□□ -0.61
CSMD1-202ENST00000400186 IMMTQ16891 758 aaKnown RBP11.25□□□□□ -0.61
CSMD1-202ENST00000400186 BMP2KQ9NSY1 1161 aaPredicted RBP11.25□□□□□ -0.61
CSMD1-202ENST00000400186 HDGFL1Q5TGJ6 251 aa11.25□□□□□ -0.61
CSMD1-202ENST00000400186 SLC4A2P04920 1241 aa11.25□□□□□ -0.61
CSMD1-202ENST00000400186 MCM3P25205 808 aa11.25□□□□□ -0.61
CSMD1-202ENST00000400186 SSR1P43307 286 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms