RNA–Protein interactions for RNA: ENST00000395906.7

CDRT1-204, CMT1A duplicated region transcript 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDRT1, Length 2,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-204ENST00000395906 PIBF1Q8WXW3 757 aa11.87□□□□□ -0.51
CDRT1-204ENST00000395906 LMOD3Q0VAK6 560 aa11.86□□□□□ -0.51
CDRT1-204ENST00000395906 ZSCAN23Q3MJ62 389 aa11.86□□□□□ -0.51
CDRT1-204ENST00000395906 CREBRFQ8IUR6 639 aa11.86□□□□□ -0.51
CDRT1-204ENST00000395906 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.86□□□□□ -0.51
CDRT1-204ENST00000395906 IDI1Q13907 227 aa11.86□□□□□ -0.51
CDRT1-204ENST00000395906 NOLC1Q14978 699 aaKnown RBP eCLIP11.86□□□□□ -0.51
CDRT1-204ENST00000395906 C14orf37Q86TY3 774 aa11.86□□□□□ -0.51
CDRT1-204ENST00000395906 SNX21Q969T3 373 aa11.86□□□□□ -0.51
CDRT1-204ENST00000395906 MYCBPQ99417 103 aaPredicted RBP11.85□□□□□ -0.51
CDRT1-204ENST00000395906 PHF14O94880 888 aa11.85□□□□□ -0.51
CDRT1-204ENST00000395906 PRR29P0C7W0 189 aa11.85□□□□□ -0.51
CDRT1-204ENST00000395906 CTR9Q6PD62 1173 aa11.85□□□□□ -0.51
CDRT1-204ENST00000395906 DIAPH3Q9NSV4 1193 aa11.85□□□□□ -0.51
CDRT1-204ENST00000395906 MORC2Q9Y6X9 1032 aaPredicted RBP11.85□□□□□ -0.51
CDRT1-204ENST00000395906 VWDEQ8N2E2 1590 aa11.84□□□□□ -0.51
CDRT1-204ENST00000395906 CTIFO43310 598 aaKnown RBP11.84□□□□□ -0.51
CDRT1-204ENST00000395906 GTF2A1P52655 376 aaPredicted RBP11.84□□□□□ -0.51
CDRT1-204ENST00000395906 BANK1Q8NDB2 785 aa11.84□□□□□ -0.51
CDRT1-204ENST00000395906 ESF1Q9H501 851 aaKnown RBP11.84□□□□□ -0.51
CDRT1-204ENST00000395906 CTNNA3Q9UI47 895 aa11.84□□□□□ -0.51
CDRT1-204ENST00000395906 DDX41Q9UJV9 622 aaKnown RBP11.84□□□□□ -0.51
CDRT1-204ENST00000395906 ST20-MTHFSA0A0A6YYL1 179 aa11.84□□□□□ -0.51
CDRT1-204ENST00000395906 FKBP5Q13451 457 aaPredicted RBP11.84□□□□□ -0.51
CDRT1-204ENST00000395906 CEP120Q8N960 986 aa11.84□□□□□ -0.51
CDRT1-204ENST00000395906 ABCC3O15438 1527 aa11.84□□□□□ -0.51
CDRT1-204ENST00000395906 NOP2P46087 812 aaKnown RBP11.83□□□□□ -0.52
CDRT1-204ENST00000395906 SIRT1Q96EB6 747 aa11.83□□□□□ -0.52
CDRT1-204ENST00000395906 EIF2AK4Q9P2K8 1649 aaKnown RBP11.83□□□□□ -0.52
CDRT1-204ENST00000395906 TET3O43151 1660 aa11.83□□□□□ -0.52
CDRT1-204ENST00000395906 ADGRF5Q8IZF2 1346 aa11.83□□□□□ -0.52
CDRT1-204ENST00000395906 PRIM1P49642 420 aaKnown RBP11.83□□□□□ -0.52
CDRT1-204ENST00000395906 NCAPGQ9BPX3 1015 aa11.83□□□□□ -0.52
CDRT1-204ENST00000395906 SPTLC3Q9NUV7 552 aa11.83□□□□□ -0.52
CDRT1-204ENST00000395906 CLTCL1P53675 1640 aa11.83□□□□□ -0.52
CDRT1-204ENST00000395906 PTPRTO14522 1441 aa11.82□□□□□ -0.52
CDRT1-204ENST00000395906 DUSP27Q5VZP5 1158 aa11.82□□□□□ -0.52
CDRT1-204ENST00000395906 EFCAB6Q5THR3 1501 aa11.82□□□□□ -0.52
CDRT1-204ENST00000395906 NPC1L1Q9UHC9 1359 aa11.82□□□□□ -0.52
CDRT1-204ENST00000395906 BRPF1P55201 1214 aaPredicted RBP11.82□□□□□ -0.52
CDRT1-204ENST00000395906 CHAF1AQ13111 956 aaPredicted RBP11.82□□□□□ -0.52
CDRT1-204ENST00000395906 SYCP1Q15431 976 aa11.82□□□□□ -0.52
CDRT1-204ENST00000395906 CAVIN1Q6NZI2 390 aaKnown RBP11.82□□□□□ -0.52
CDRT1-204ENST00000395906 SMC4Q9NTJ3 1288 aa11.82□□□□□ -0.52
CDRT1-204ENST00000395906 CGNL1Q0VF96 1302 aa11.82□□□□□ -0.52
CDRT1-204ENST00000395906 CFAP70Q5T0N1 1121 aa11.81□□□□□ -0.52
CDRT1-204ENST00000395906 RSPH14Q9UHP6 348 aa11.81□□□□□ -0.52
CDRT1-204ENST00000395906 SPHKAPQ2M3C7 1700 aa11.81□□□□□ -0.52
CDRT1-204ENST00000395906 ZBTB7CA1YPR0 619 aa11.81□□□□□ -0.52
CDRT1-204ENST00000395906 ERICH4A6NGS2 130 aa11.81□□□□□ -0.52
CDRT1-204ENST00000395906 USP47Q96K76 1375 aa11.81□□□□□ -0.52
CDRT1-204ENST00000395906 RNF17Q9BXT8 1623 aaKnown RBP11.81□□□□□ -0.52
CDRT1-204ENST00000395906 BAG4O95429 457 aaKnown RBP11.8□□□□□ -0.52
CDRT1-204ENST00000395906 TMED8Q6PL24 325 aaPredicted RBP11.8□□□□□ -0.52
CDRT1-204ENST00000395906 KRT222Q8N1A0 295 aa11.8□□□□□ -0.52
CDRT1-204ENST00000395906 RIOK3O14730 519 aaKnown RBP11.8□□□□□ -0.52
CDRT1-204ENST00000395906 TMEM132EQ6IEE7 984 aa11.8□□□□□ -0.52
CDRT1-204ENST00000395906 EGFL6Q8IUX8 553 aa11.8□□□□□ -0.52
CDRT1-204ENST00000395906 STAG3Q9UJ98 1225 aa11.8□□□□□ -0.52
CDRT1-204ENST00000395906 CEP83Q9Y592 693 aa11.8□□□□□ -0.52
CDRT1-204ENST00000395906 TRPM2O94759 1503 aa11.8□□□□□ -0.52
CDRT1-204ENST00000395906 DHX16O60231 1041 aaKnown RBP11.79□□□□□ -0.52
CDRT1-204ENST00000395906 MCCP23508 829 aa11.79□□□□□ -0.52
CDRT1-204ENST00000395906 CLUAP1Q96AJ1 413 aa11.79□□□□□ -0.52
CDRT1-204ENST00000395906 BRMS1Q9HCU9 246 aa11.79□□□□□ -0.52
CDRT1-204ENST00000395906 PRAG1Q86YV5 1406 aa11.79□□□□□ -0.52
CDRT1-204ENST00000395906 PARD3Q8TEW0 1356 aa11.79□□□□□ -0.52
CDRT1-204ENST00000395906 RAD51AP2Q09MP3 1159 aa11.79□□□□□ -0.52
CDRT1-204ENST00000395906 ICE2Q659A1 982 aa11.79□□□□□ -0.52
CDRT1-204ENST00000395906 LRSAM1Q6UWE0 723 aa11.79□□□□□ -0.52
CDRT1-204ENST00000395906 TRERF1Q96PN7 1200 aa11.79□□□□□ -0.52
CDRT1-204ENST00000395906 RASSF4Q9H2L5 321 aa11.79□□□□□ -0.52
CDRT1-204ENST00000395906 SSFA2P28290 1259 aa11.78□□□□□ -0.52
CDRT1-204ENST00000395906 SPINK5Q9NQ38 1064 aaPredicted RBP11.78□□□□□ -0.52
CDRT1-204ENST00000395906 CT47A1Q5JQC4 288 aaPredicted RBP11.78□□□□□ -0.52
CDRT1-204ENST00000395906 CCDC172P0C7W6 258 aa11.77□□□□□ -0.52
CDRT1-204ENST00000395906 EP400NLQ6ZTU2 488 aa11.77□□□□□ -0.52
CDRT1-204ENST00000395906 PMFBP1Q8TBY8 1022 aa11.77□□□□□ -0.52
CDRT1-204ENST00000395906 SLC26A8Q96RN1 970 aa11.77□□□□□ -0.52
CDRT1-204ENST00000395906 HNRNPH2P55795 449 aaKnown RBP11.77□□□□□ -0.53
CDRT1-204ENST00000395906 NCBP1Q09161 790 aaKnown RBP11.77□□□□□ -0.53
CDRT1-204ENST00000395906 KIF18AQ8NI77 898 aa11.77□□□□□ -0.53
CDRT1-204ENST00000395906 CAMSAP1Q5T5Y3 1602 aa11.76□□□□□ -0.53
CDRT1-204ENST00000395906 NOS1P29475 1434 aa11.76□□□□□ -0.53
CDRT1-204ENST00000395906 PDE3AQ14432 1141 aa11.76□□□□□ -0.53
CDRT1-204ENST00000395906 LMTK2Q8IWU2 1503 aa11.76□□□□□ -0.53
CDRT1-204ENST00000395906 ARHGEF40Q8TER5 1519 aa11.76□□□□□ -0.53
CDRT1-204ENST00000395906 GUCY2CP25092 1073 aa11.75□□□□□ -0.53
CDRT1-204ENST00000395906 SATB1Q01826 763 aa11.75□□□□□ -0.53
CDRT1-204ENST00000395906 LMBRD1Q9NUN5 540 aa11.75□□□□□ -0.53
CDRT1-204ENST00000395906 PDZRN3Q9UPQ7 1066 aa11.75□□□□□ -0.53
CDRT1-204ENST00000395906 UHRF1BP1Q6BDS2 1440 aa11.75□□□□□ -0.53
CDRT1-204ENST00000395906 CLTCQ00610 1675 aaKnown RBP11.75□□□□□ -0.53
CDRT1-204ENST00000395906 CYP2C19P33261 490 aa11.75□□□□□ -0.53
CDRT1-204ENST00000395906 TICAM2Q86XR7 235 aa11.75□□□□□ -0.53
CDRT1-204ENST00000395906 GOLGA2Q08379 1002 aa11.74□□□□□ -0.53
CDRT1-204ENST00000395906 NBPF20Q3BBV1 942 aa11.74□□□□□ -0.53
CDRT1-204ENST00000395906 RAD50Q92878 1312 aa11.74□□□□□ -0.53
CDRT1-204ENST00000395906 SAFB2Q14151 953 aaKnown RBP eCLIP11.74□□□□□ -0.53
CDRT1-204ENST00000395906 HSP90AB3PQ58FF7 597 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms