RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 NCBP3Q53F19 620 aaKnown RBP20.45■□□□□ 0.86
NKX3-1-201ENST00000380871 NUTM2GQ5VZR2 741 aa20.45■□□□□ 0.86
NKX3-1-201ENST00000380871 PANK2Q9BZ23 570 aa20.45■□□□□ 0.86
NKX3-1-201ENST00000380871 RRAGDQ9NQL2 400 aaPredicted RBP20.44■□□□□ 0.86
NKX3-1-201ENST00000380871 AEBP1Q8IUX7 1158 aa20.44■□□□□ 0.86
NKX3-1-201ENST00000380871 TSPYL6Q8N831 410 aa20.44■□□□□ 0.86
NKX3-1-201ENST00000380871 EID1Q9Y6B2 187 aa20.44■□□□□ 0.86
NKX3-1-201ENST00000380871 ROBO2Q9HCK4 1378 aa20.43■□□□□ 0.86
NKX3-1-201ENST00000380871 PRKCSHP14314 528 aaPredicted RBP20.43■□□□□ 0.86
NKX3-1-201ENST00000380871 ACEP12821 1306 aa20.42■□□□□ 0.86
NKX3-1-201ENST00000380871 XRCC6P12956 609 aaKnown RBP eCLIP20.42■□□□□ 0.86
NKX3-1-201ENST00000380871 AGLP35573 1532 aa20.42■□□□□ 0.86
NKX3-1-201ENST00000380871 NFE2L2Q16236 605 aa20.41■□□□□ 0.86
NKX3-1-201ENST00000380871 SULT6B1Q6IMI4 303 aa20.41■□□□□ 0.86
NKX3-1-201ENST00000380871 CHMP5Q9NZZ3 219 aa20.41■□□□□ 0.86
NKX3-1-201ENST00000380871 TMEM2Q9UHN6 1383 aa20.41■□□□□ 0.86
NKX3-1-201ENST00000380871 C14orf37Q86TY3 774 aa20.41■□□□□ 0.86
NKX3-1-201ENST00000380871 IL13P35225 146 aa20.4■□□□□ 0.86
NKX3-1-201ENST00000380871 NUCB1Q02818 461 aa20.4■□□□□ 0.86
NKX3-1-201ENST00000380871 AMOTL2Q9Y2J4 779 aa20.4■□□□□ 0.86
NKX3-1-201ENST00000380871 KIF16BQ96L93 1317 aa20.4■□□□□ 0.86
NKX3-1-201ENST00000380871 HSCBQ8IWL3 235 aa20.4■□□□□ 0.86
NKX3-1-201ENST00000380871 NGDNQ8NEJ9 315 aaKnown RBP20.4■□□□□ 0.86
NKX3-1-201ENST00000380871 IL16Q14005 1332 aa20.39■□□□□ 0.86
NKX3-1-201ENST00000380871 ZNF692Q9BU19 519 aaPredicted RBP20.39■□□□□ 0.86
NKX3-1-201ENST00000380871 SPATA31D1Q6ZQQ2 1576 aa20.39■□□□□ 0.85
NKX3-1-201ENST00000380871 TRAK2O60296 914 aa20.39■□□□□ 0.85
NKX3-1-201ENST00000380871 L1TD1Q5T7N2 865 aaKnown RBP20.39■□□□□ 0.85
NKX3-1-201ENST00000380871 LRRC7Q96NW7 1537 aa20.39■□□□□ 0.85
NKX3-1-201ENST00000380871 HSP90AB2PQ58FF8 381 aa20.38■□□□□ 0.85
NKX3-1-201ENST00000380871 CHD1LQ86WJ1 897 aa20.38■□□□□ 0.85
NKX3-1-201ENST00000380871 GOLGA6L3A6NEY3 463 aa20.38■□□□□ 0.85
NKX3-1-201ENST00000380871 IPO8O15397 1037 aaKnown RBP20.37■□□□□ 0.85
NKX3-1-201ENST00000380871 FOXD4L1Q9NU39 408 aa20.37■□□□□ 0.85
NKX3-1-201ENST00000380871 ZBTB7CA1YPR0 619 aa20.36■□□□□ 0.85
NKX3-1-201ENST00000380871 KRT24Q2M2I5 525 aa20.36■□□□□ 0.85
NKX3-1-201ENST00000380871 ANKRD45Q5TZF3 282 aa20.36■□□□□ 0.85
NKX3-1-201ENST00000380871 FSD2A1L4K1 749 aa20.36■□□□□ 0.85
NKX3-1-201ENST00000380871 PNPLA6Q8IY17 1366 aa20.36■□□□□ 0.85
NKX3-1-201ENST00000380871 CD2BP2O95400 341 aaKnown RBP20.35■□□□□ 0.85
NKX3-1-201ENST00000380871 MBIPQ9NS73 344 aa20.35■□□□□ 0.85
NKX3-1-201ENST00000380871 TTC21BQ7Z4L5 1316 aa20.35■□□□□ 0.85
NKX3-1-201ENST00000380871 CPS1P31327 1500 aa20.35■□□□□ 0.85
NKX3-1-201ENST00000380871 EDC4Q6P2E9 1401 aaKnown RBP20.35■□□□□ 0.85
NKX3-1-201ENST00000380871 MCM10Q7L590 875 aa20.35■□□□□ 0.85
NKX3-1-201ENST00000380871 MIS18AQ9NYP9 233 aa20.35■□□□□ 0.85
NKX3-1-201ENST00000380871 LTV1Q96GA3 475 aaPredicted RBP20.34■□□□□ 0.85
NKX3-1-201ENST00000380871 C8orf58Q8NAV2 365 aa20.34■□□□□ 0.85
NKX3-1-201ENST00000380871 EIF4A2Q14240 407 aaKnown RBP20.33■□□□□ 0.85
NKX3-1-201ENST00000380871 RBM25P49756 843 aaKnown RBP20.33■□□□□ 0.85
NKX3-1-201ENST00000380871 ANKRD26Q9UPS8 1709 aa20.33■□□□□ 0.85
NKX3-1-201ENST00000380871 ZBTB7BO15156 539 aaPredicted RBP20.33■□□□□ 0.84
NKX3-1-201ENST00000380871 ALDH1L2Q3SY69 923 aa20.33■□□□□ 0.84
NKX3-1-201ENST00000380871 RBM42Q9BTD8 480 aaKnown RBP20.33■□□□□ 0.84
NKX3-1-201ENST00000380871 TWISTNBQ3B726 338 aaPredicted RBP20.32■□□□□ 0.84
NKX3-1-201ENST00000380871 SIRT2Q8IXJ6 389 aa20.32■□□□□ 0.84
NKX3-1-201ENST00000380871 KIF2CQ99661 725 aa20.32■□□□□ 0.84
NKX3-1-201ENST00000380871 ATP7BP35670 1465 aa20.32■□□□□ 0.84
NKX3-1-201ENST00000380871 VAMP4O75379 141 aa20.31■□□□□ 0.84
NKX3-1-201ENST00000380871 DDIT3P35638 169 aa20.31■□□□□ 0.84
NKX3-1-201ENST00000380871 CPSF1Q10570 1443 aaKnown RBP20.31■□□□□ 0.84
NKX3-1-201ENST00000380871 FAM135BQ49AJ0 1406 aa20.31■□□□□ 0.84
NKX3-1-201ENST00000380871 GNAI1P63096 354 aa20.31■□□□□ 0.84
NKX3-1-201ENST00000380871 MED14O60244 1454 aa20.31■□□□□ 0.84
NKX3-1-201ENST00000380871 MRPL50Q8N5N7 158 aaKnown RBP20.3■□□□□ 0.84
NKX3-1-201ENST00000380871 TNPO1Q92973 898 aaKnown RBP20.3■□□□□ 0.84
NKX3-1-201ENST00000380871 NCOA3Q9Y6Q9 1424 aa20.3■□□□□ 0.84
NKX3-1-201ENST00000380871 HSP90AB1P08238 724 aaKnown RBP20.29■□□□□ 0.84
NKX3-1-201ENST00000380871 FOXO3O43524 673 aa20.29■□□□□ 0.84
NKX3-1-201ENST00000380871 AMPHP49418 695 aa20.29■□□□□ 0.84
NKX3-1-201ENST00000380871 BMP2KLQ5H9B9 411 aa20.29■□□□□ 0.84
NKX3-1-201ENST00000380871 TBC1D9Q6ZT07 1266 aa20.28■□□□□ 0.84
NKX3-1-201ENST00000380871 ADAMTS13Q76LX8 1427 aa20.28■□□□□ 0.84
NKX3-1-201ENST00000380871 DLC1Q96QB1 1528 aa20.27■□□□□ 0.84
NKX3-1-201ENST00000380871 NLRP6P59044 892 aa20.27■□□□□ 0.84
NKX3-1-201ENST00000380871 KIF13AQ9H1H9 1805 aa20.27■□□□□ 0.84
NKX3-1-201ENST00000380871 REREQ9P2R6 1566 aa20.27■□□□□ 0.84
NKX3-1-201ENST00000380871 KIF20BQ96Q89 1820 aa20.27■□□□□ 0.83
NKX3-1-201ENST00000380871 CALD1Q05682 793 aaKnown RBP20.26■□□□□ 0.83
NKX3-1-201ENST00000380871 MAP2P11137 1827 aaKnown RBP20.26■□□□□ 0.83
NKX3-1-201ENST00000380871 KCNA6P17658 529 aa20.26■□□□□ 0.83
NKX3-1-201ENST00000380871 THEMISQ8N1K5 641 aaPredicted RBP20.26■□□□□ 0.83
NKX3-1-201ENST00000380871 SNX21Q969T3 373 aa20.26■□□□□ 0.83
NKX3-1-201ENST00000380871 NRXN3Q9Y4C0 1643 aa20.25■□□□□ 0.83
NKX3-1-201ENST00000380871 APBB1O00213 710 aa20.25■□□□□ 0.83
NKX3-1-201ENST00000380871 DDX11L8A8MPP1 907 aa20.24■□□□□ 0.83
NKX3-1-201ENST00000380871 NECTIN2Q92692 538 aa20.24■□□□□ 0.83
NKX3-1-201ENST00000380871 IFT57Q9NWB7 429 aa20.24■□□□□ 0.83
NKX3-1-201ENST00000380871 HSP90AA1P07900 732 aaKnown RBP20.24■□□□□ 0.83
NKX3-1-201ENST00000380871 PTPRUQ92729 1446 aa20.23■□□□□ 0.83
NKX3-1-201ENST00000380871 LMOD3Q0VAK6 560 aa20.23■□□□□ 0.83
NKX3-1-201ENST00000380871 GAS2L3Q86XJ1 694 aa20.23■□□□□ 0.83
NKX3-1-201ENST00000380871 SIRT1Q96EB6 747 aa20.23■□□□□ 0.83
NKX3-1-201ENST00000380871 CFAP44Q96MT7 982 aa20.23■□□□□ 0.83
NKX3-1-201ENST00000380871 GRPEL1Q9HAV7 217 aa20.22■□□□□ 0.83
NKX3-1-201ENST00000380871 CDC42BPGQ6DT37 1551 aa20.22■□□□□ 0.83
NKX3-1-201ENST00000380871 MAP3K19Q56UN5 1328 aa20.22■□□□□ 0.83
NKX3-1-201ENST00000380871 GCC1Q96CN9 775 aa20.22■□□□□ 0.83
NKX3-1-201ENST00000380871 PTCH1Q13635 1447 aa20.22■□□□□ 0.83
NKX3-1-201ENST00000380871 BRPF1P55201 1214 aaPredicted RBP20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 159.2 ms