RNA–Protein interactions for RNA: ENST00000378037.9

CKAP2-203, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CKAP2, Length 3,629 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-203ENST00000378037 CCDC85AQ96PX6 553 aaPredicted RBP10.24□□□□□ -0.77
CKAP2-203ENST00000378037 STK31Q9BXU1 1019 aa10.24□□□□□ -0.77
CKAP2-203ENST00000378037 MSH5O43196 834 aa10.24□□□□□ -0.77
CKAP2-203ENST00000378037 POLKQ9UBT6 870 aa10.24□□□□□ -0.77
CKAP2-203ENST00000378037 SETBP1Q9Y6X0 1596 aa10.24□□□□□ -0.77
CKAP2-203ENST00000378037 SLC4A2P04920 1241 aa10.24□□□□□ -0.77
CKAP2-203ENST00000378037 TWISTNBQ3B726 338 aaPredicted RBP10.24□□□□□ -0.77
CKAP2-203ENST00000378037 TSHZ3Q63HK5 1081 aa10.24□□□□□ -0.77
CKAP2-203ENST00000378037 XRN1Q8IZH2 1706 aaKnown RBP10.23□□□□□ -0.77
CKAP2-203ENST00000378037 NRXN3Q9Y4C0 1643 aa10.23□□□□□ -0.77
CKAP2-203ENST00000378037 IGHDP01880 384 aa10.23□□□□□ -0.77
CKAP2-203ENST00000378037 TMEM57Q8N5G2 664 aa10.23□□□□□ -0.77
CKAP2-203ENST00000378037 TRIM6-TRIM34B2RNG4 842 aa10.22□□□□□ -0.77
CKAP2-203ENST00000378037 EVA1CP58658 441 aa10.22□□□□□ -0.77
CKAP2-203ENST00000378037 CHD2O14647 1828 aaKnown RBP10.22□□□□□ -0.77
CKAP2-203ENST00000378037 ERVK-7P63135 1459 aa10.22□□□□□ -0.77
CKAP2-203ENST00000378037 MYL6BP14649 208 aa10.22□□□□□ -0.77
CKAP2-203ENST00000378037 NCLP19338 710 aaKnown RBP10.22□□□□□ -0.77
CKAP2-203ENST00000378037 ATAD2Q6PL18 1390 aa10.22□□□□□ -0.77
CKAP2-203ENST00000378037 KDM4FA0A1W2PPD8 638 aa10.22□□□□□ -0.77
CKAP2-203ENST00000378037 IPO8O15397 1037 aaKnown RBP10.21□□□□□ -0.77
CKAP2-203ENST00000378037 DTNBO60941 627 aa10.21□□□□□ -0.77
CKAP2-203ENST00000378037 PTCD1O75127 700 aaKnown RBP10.21□□□□□ -0.77
CKAP2-203ENST00000378037 MAP4K4O95819 1239 aaPredicted RBP10.21□□□□□ -0.77
CKAP2-203ENST00000378037 METP08581 1390 aa10.21□□□□□ -0.77
CKAP2-203ENST00000378037 TNRQ92752 1358 aa10.21□□□□□ -0.77
CKAP2-203ENST00000378037 ADAMTS2O95450 1211 aa10.21□□□□□ -0.77
CKAP2-203ENST00000378037 RILPL2Q969X0 211 aa10.21□□□□□ -0.77
CKAP2-203ENST00000378037 RWDD1Q9H446 243 aaPredicted RBP10.21□□□□□ -0.77
CKAP2-203ENST00000378037 NAP1L2Q9ULW6 460 aaPredicted RBP10.21□□□□□ -0.77
CKAP2-203ENST00000378037 FANCIQ9NVI1 1328 aa10.21□□□□□ -0.78
CKAP2-203ENST00000378037 PNNQ9H307 717 aaKnown RBP10.21□□□□□ -0.78
CKAP2-203ENST00000378037 GPRASP1Q5JY77 1395 aa10.21□□□□□ -0.78
CKAP2-203ENST00000378037 SMARCA5O60264 1052 aaPredicted RBP10.2□□□□□ -0.78
CKAP2-203ENST00000378037 RIMS2Q9UQ26 1411 aa10.2□□□□□ -0.78
CKAP2-203ENST00000378037 PARD3Q8TEW0 1356 aa10.2□□□□□ -0.78
CKAP2-203ENST00000378037 RARSP54136 660 aaKnown RBP10.2□□□□□ -0.78
CKAP2-203ENST00000378037 NPHP1O15259 732 aa10.2□□□□□ -0.78
CKAP2-203ENST00000378037 PDZRN3Q9UPQ7 1066 aa10.2□□□□□ -0.78
CKAP2-203ENST00000378037 SRCAPQ6ZRS2 3230 aa10.2□□□□□ -0.78
CKAP2-203ENST00000378037 KIF1BO60333 1816 aa10.2□□□□□ -0.78
CKAP2-203ENST00000378037 RPGRIP1LQ68CZ1 1315 aa10.19□□□□□ -0.78
CKAP2-203ENST00000378037 C1orf141Q5JVX7 400 aa10.19□□□□□ -0.78
CKAP2-203ENST00000378037 MYO5BQ9ULV0 1848 aa10.19□□□□□ -0.78
CKAP2-203ENST00000378037 STRCP1A6NGW2 1772 aa10.19□□□□□ -0.78
CKAP2-203ENST00000378037 SLC39A6Q13433 755 aa10.19□□□□□ -0.78
CKAP2-203ENST00000378037 ZNF530Q6P9A1 599 aaPredicted RBP10.19□□□□□ -0.78
CKAP2-203ENST00000378037 PHF8Q9UPP1 1060 aa10.19□□□□□ -0.78
CKAP2-203ENST00000378037 C8orf58Q8NAV2 365 aa10.18□□□□□ -0.78
CKAP2-203ENST00000378037 PCDHB15Q9Y5E8 787 aa10.18□□□□□ -0.78
CKAP2-203ENST00000378037 NRXN1Q9ULB1 1477 aa10.18□□□□□ -0.78
CKAP2-203ENST00000378037 SMG6Q86US8 1419 aaKnown RBP10.18□□□□□ -0.78
CKAP2-203ENST00000378037 TRIM27P14373 513 aa10.18□□□□□ -0.78
CKAP2-203ENST00000378037 SIL1Q9H173 461 aa10.18□□□□□ -0.78
CKAP2-203ENST00000378037 IL1RAPL2Q9NP60 686 aa10.18□□□□□ -0.78
CKAP2-203ENST00000378037 STAC3Q96MF2 364 aa10.17□□□□□ -0.78
CKAP2-203ENST00000378037 EXOC6BQ9Y2D4 811 aa10.17□□□□□ -0.78
CKAP2-203ENST00000378037 CPS1P31327 1500 aa10.17□□□□□ -0.78
CKAP2-203ENST00000378037 RAPGEF4Q8WZA2 1011 aa10.17□□□□□ -0.78
CKAP2-203ENST00000378037 PPIP5K1Q6PFW1 1433 aa10.17□□□□□ -0.78
CKAP2-203ENST00000378037 EIF4A2Q14240 407 aaKnown RBP10.16□□□□□ -0.78
CKAP2-203ENST00000378037 FAM161AQ3B820 660 aa10.16□□□□□ -0.78
CKAP2-203ENST00000378037 CENPQQ7L2Z9 268 aaPredicted RBP10.16□□□□□ -0.78
CKAP2-203ENST00000378037 IPO9Q96P70 1041 aaKnown RBP10.16□□□□□ -0.78
CKAP2-203ENST00000378037 KCNJ4P48050 445 aa10.16□□□□□ -0.78
CKAP2-203ENST00000378037 PRDM11Q9NQV5 511 aa10.16□□□□□ -0.78
CKAP2-203ENST00000378037 MBIPQ9NS73 344 aa10.16□□□□□ -0.78
CKAP2-203ENST00000378037 ZFYVE9O95405 1425 aa10.16□□□□□ -0.78
CKAP2-203ENST00000378037 TOM1L2Q6ZVM7 507 aa10.16□□□□□ -0.78
CKAP2-203ENST00000378037 USP54Q70EL1 1684 aa10.16□□□□□ -0.78
CKAP2-203ENST00000378037 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.15□□□□□ -0.78
CKAP2-203ENST00000378037 YTHDC2Q9H6S0 1430 aaKnown RBP10.15□□□□□ -0.78
CKAP2-203ENST00000378037 ATF7IPQ6VMQ6 1270 aa10.15□□□□□ -0.78
CKAP2-203ENST00000378037 TTC21BQ7Z4L5 1316 aa10.15□□□□□ -0.78
CKAP2-203ENST00000378037 HSP90AB1P08238 724 aaKnown RBP10.15□□□□□ -0.79
CKAP2-203ENST00000378037 GNAI1P63096 354 aa10.15□□□□□ -0.79
CKAP2-203ENST00000378037 HDGFL1Q5TGJ6 251 aa10.15□□□□□ -0.79
CKAP2-203ENST00000378037 NFE2L2Q16236 605 aa10.14□□□□□ -0.79
CKAP2-203ENST00000378037 MAP3K19Q56UN5 1328 aa10.14□□□□□ -0.79
CKAP2-203ENST00000378037 C9orf78Q9NZ63 289 aaPredicted RBP10.14□□□□□ -0.79
CKAP2-203ENST00000378037 RBM42Q9BTD8 480 aaKnown RBP10.14□□□□□ -0.79
CKAP2-203ENST00000378037 NCOA3Q9Y6Q9 1424 aa10.13□□□□□ -0.79
CKAP2-203ENST00000378037 PRR36Q9H6K5 1346 aa10.13□□□□□ -0.79
CKAP2-203ENST00000378037 CHMP4CQ96CF2 233 aa10.13□□□□□ -0.79
CKAP2-203ENST00000378037 MTHFSDQ2M296 383 aaKnown RBP10.13□□□□□ -0.79
CKAP2-203ENST00000378037 LARP6Q9BRS8 491 aaKnown RBP10.13□□□□□ -0.79
CKAP2-203ENST00000378037 CLTCL1P53675 1640 aa10.13□□□□□ -0.79
CKAP2-203ENST00000378037 GOLGB1Q14789 3259 aaKnown RBP10.12□□□□□ -0.79
CKAP2-203ENST00000378037 FCHSD2O94868 740 aa10.12□□□□□ -0.79
CKAP2-203ENST00000378037 DEKP35659 375 aaKnown RBP10.12□□□□□ -0.79
CKAP2-203ENST00000378037 EYA1Q99502 592 aa10.12□□□□□ -0.79
CKAP2-203ENST00000378037 ADGRB2O60241 1585 aa10.12□□□□□ -0.79
CKAP2-203ENST00000378037 KDM4AO75164 1064 aa10.12□□□□□ -0.79
CKAP2-203ENST00000378037 SEC24BO95487 1268 aa10.12□□□□□ -0.79
CKAP2-203ENST00000378037 KRT28Q7Z3Y7 464 aa10.12□□□□□ -0.79
CKAP2-203ENST00000378037 C16orf71Q8IYS4 520 aaPredicted RBP10.12□□□□□ -0.79
CKAP2-203ENST00000378037 ZNF692Q9BU19 519 aaPredicted RBP10.12□□□□□ -0.79
CKAP2-203ENST00000378037 DDX19BQ9UMR2 479 aa10.12□□□□□ -0.79
CKAP2-203ENST00000378037 CALD1Q05682 793 aaKnown RBP10.12□□□□□ -0.79
CKAP2-203ENST00000378037 LMOD3Q0VAK6 560 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms