RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 USP26Q9BXU7 913 aa19.5■□□□□ 0.71
CKAP4-201ENST00000378026 ZDHHC9Q9Y397 364 aa19.5■□□□□ 0.71
CKAP4-201ENST00000378026 CYP2E1P05181 493 aaPredicted RBP19.49■□□□□ 0.71
CKAP4-201ENST00000378026 NCBP3Q53F19 620 aaKnown RBP19.49■□□□□ 0.71
CKAP4-201ENST00000378026 NOL8Q76FK4 1167 aaKnown RBP19.49■□□□□ 0.71
CKAP4-201ENST00000378026 C14orf93Q9H972 538 aaKnown RBP19.49■□□□□ 0.71
CKAP4-201ENST00000378026 IL16Q14005 1332 aa19.49■□□□□ 0.71
CKAP4-201ENST00000378026 HMOX1P09601 288 aa19.48■□□□□ 0.71
CKAP4-201ENST00000378026 CSPP1Q1MSJ5 1256 aa19.48■□□□□ 0.71
CKAP4-201ENST00000378026 LRSAM1Q6UWE0 723 aa19.48■□□□□ 0.71
CKAP4-201ENST00000378026 PODXL2Q9NZ53 605 aa19.48■□□□□ 0.71
CKAP4-201ENST00000378026 MYOM2P54296 1465 aa19.48■□□□□ 0.71
CKAP4-201ENST00000378026 PRKAR2BP31323 418 aa19.48■□□□□ 0.71
CKAP4-201ENST00000378026 MRPL50Q8N5N7 158 aaKnown RBP19.48■□□□□ 0.71
CKAP4-201ENST00000378026 CCDC39Q9UFE4 941 aa19.48■□□□□ 0.71
CKAP4-201ENST00000378026 ADGRB2O60241 1585 aa19.47■□□□□ 0.71
CKAP4-201ENST00000378026 DYNC1I1O14576 645 aa19.47■□□□□ 0.71
CKAP4-201ENST00000378026 ANKRD36BQ8N2N9 1353 aa19.47■□□□□ 0.71
CKAP4-201ENST00000378026 SMARCA5O60264 1052 aaPredicted RBP19.47■□□□□ 0.71
CKAP4-201ENST00000378026 ST18O60284 1047 aa19.47■□□□□ 0.71
CKAP4-201ENST00000378026 VAMP4O75379 141 aa19.47■□□□□ 0.71
CKAP4-201ENST00000378026 SASS6Q6UVJ0 657 aa19.47■□□□□ 0.71
CKAP4-201ENST00000378026 ZNF830Q96NB3 372 aaPredicted RBP19.46■□□□□ 0.71
CKAP4-201ENST00000378026 ABCC1P33527 1531 aa19.45■□□□□ 0.7
CKAP4-201ENST00000378026 ADGRL1O94910 1474 aa19.45■□□□□ 0.7
CKAP4-201ENST00000378026 FAM177BA6PVY3 158 aa19.45■□□□□ 0.7
CKAP4-201ENST00000378026 TTC22Q5TAA0 569 aa19.45■□□□□ 0.7
CKAP4-201ENST00000378026 A0A0U1RQG5 324 aaPredicted RBP19.45■□□□□ 0.7
CKAP4-201ENST00000378026 TET3O43151 1660 aa19.44■□□□□ 0.7
CKAP4-201ENST00000378026 INTS3Q68E01 1043 aaKnown RBP19.44■□□□□ 0.7
CKAP4-201ENST00000378026 CWC22Q9HCG8 908 aaKnown RBP19.44■□□□□ 0.7
CKAP4-201ENST00000378026 A0A1W2PP64 1363 aa19.44■□□□□ 0.7
CKAP4-201ENST00000378026 FYB1O15117 783 aa19.43■□□□□ 0.7
CKAP4-201ENST00000378026 PHACTR3Q96KR7 559 aa19.43■□□□□ 0.7
CKAP4-201ENST00000378026 CHMP4BQ9H444 224 aaKnown RBP19.43■□□□□ 0.7
CKAP4-201ENST00000378026 SDSP20132 328 aa19.43■□□□□ 0.7
CKAP4-201ENST00000378026 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.43■□□□□ 0.7
CKAP4-201ENST00000378026 CFAP65Q6ZU64 1925 aaKnown RBP19.42■□□□□ 0.7
CKAP4-201ENST00000378026 QRICH2Q9H0J4 1663 aa19.42■□□□□ 0.7
CKAP4-201ENST00000378026 GDPD2Q9HCC8 539 aa19.42■□□□□ 0.7
CKAP4-201ENST00000378026 C17orf53Q8N3J3 647 aaPredicted RBP19.42■□□□□ 0.7
CKAP4-201ENST00000378026 GGT6Q6P531 493 aa19.41■□□□□ 0.7
CKAP4-201ENST00000378026 NSD2O96028 1365 aa19.41■□□□□ 0.7
CKAP4-201ENST00000378026 NEK4P51957 841 aa19.4■□□□□ 0.7
CKAP4-201ENST00000378026 KIAA2012Q0VF49 1180 aa19.4■□□□□ 0.7
CKAP4-201ENST00000378026 ZFYVE16Q7Z3T8 1539 aa19.4■□□□□ 0.7
CKAP4-201ENST00000378026 TWISTNBQ3B726 338 aaPredicted RBP19.4■□□□□ 0.7
CKAP4-201ENST00000378026 SMAP1Q8IYB5 467 aaPredicted RBP19.4■□□□□ 0.7
CKAP4-201ENST00000378026 MINK1Q8N4C8 1332 aaPredicted RBP19.4■□□□□ 0.7
CKAP4-201ENST00000378026 MROH2AA6NES4 1674 aa19.4■□□□□ 0.7
CKAP4-201ENST00000378026 KIF1BO60333 1816 aa19.4■□□□□ 0.7
CKAP4-201ENST00000378026 CASC1Q6TDU7 716 aa19.4■□□□□ 0.7
CKAP4-201ENST00000378026 MCM5P33992 734 aa19.39■□□□□ 0.69
CKAP4-201ENST00000378026 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.39■□□□□ 0.69
CKAP4-201ENST00000378026 MBIPQ9NS73 344 aa19.39■□□□□ 0.69
CKAP4-201ENST00000378026 MTERF4Q7Z6M4 381 aaKnown RBP19.39■□□□□ 0.69
CKAP4-201ENST00000378026 C8orf58Q8NAV2 365 aa19.39■□□□□ 0.69
CKAP4-201ENST00000378026 MYO3AQ8NEV4 1616 aa19.39■□□□□ 0.69
CKAP4-201ENST00000378026 TSPY26PQ9H489 355 aa19.38■□□□□ 0.69
CKAP4-201ENST00000378026 MED14O60244 1454 aa19.38■□□□□ 0.69
CKAP4-201ENST00000378026 CBX1P83916 185 aa19.38■□□□□ 0.69
CKAP4-201ENST00000378026 DCTPP1Q9H773 170 aa19.38■□□□□ 0.69
CKAP4-201ENST00000378026 PLEKHG5O94827 1062 aa19.37■□□□□ 0.69
CKAP4-201ENST00000378026 ERCC6L2Q5T890 1561 aa19.37■□□□□ 0.69
CKAP4-201ENST00000378026 PLCB2Q00722 1185 aa19.37■□□□□ 0.69
CKAP4-201ENST00000378026 ARHGAP45Q92619 1136 aa19.37■□□□□ 0.69
CKAP4-201ENST00000378026 FCHSD2O94868 740 aa19.36■□□□□ 0.69
CKAP4-201ENST00000378026 ABCC4O15439 1325 aa19.36■□□□□ 0.69
CKAP4-201ENST00000378026 DCTN1Q14203 1278 aa19.36■□□□□ 0.69
CKAP4-201ENST00000378026 TMX3Q96JJ7 454 aa19.36■□□□□ 0.69
CKAP4-201ENST00000378026 CCDC94Q9BW85 323 aaPredicted RBP19.36■□□□□ 0.69
CKAP4-201ENST00000378026 TTC12Q9H892 705 aaPredicted RBP19.36■□□□□ 0.69
CKAP4-201ENST00000378026 FAM83GA6ND36 823 aa19.36■□□□□ 0.69
CKAP4-201ENST00000378026 USP25Q9UHP3 1055 aa19.35■□□□□ 0.69
CKAP4-201ENST00000378026 NRXN1Q9ULB1 1477 aa19.35■□□□□ 0.69
CKAP4-201ENST00000378026 ARHGAP31Q2M1Z3 1444 aa19.35■□□□□ 0.69
CKAP4-201ENST00000378026 GADD45BO75293 160 aaPredicted RBP19.35■□□□□ 0.69
CKAP4-201ENST00000378026 MBD3O95983 291 aa19.35■□□□□ 0.69
CKAP4-201ENST00000378026 TSHZ3Q63HK5 1081 aa19.35■□□□□ 0.69
CKAP4-201ENST00000378026 ZNF428Q96B54 188 aa19.34■□□□□ 0.69
CKAP4-201ENST00000378026 TULP4Q9NRJ4 1543 aa19.34■□□□□ 0.69
CKAP4-201ENST00000378026 REC8O95072 547 aa19.34■□□□□ 0.69
CKAP4-201ENST00000378026 BRPF1P55201 1214 aaPredicted RBP19.34■□□□□ 0.69
CKAP4-201ENST00000378026 GNAI1P63096 354 aa19.34■□□□□ 0.69
CKAP4-201ENST00000378026 API5Q9BZZ5 524 aaKnown RBP19.34■□□□□ 0.69
CKAP4-201ENST00000378026 TERF2IPQ9NYB0 399 aa19.34■□□□□ 0.69
CKAP4-201ENST00000378026 COL3A1P02461 1466 aaPredicted RBP19.34■□□□□ 0.69
CKAP4-201ENST00000378026 NFE2L2Q16236 605 aa19.33■□□□□ 0.69
CKAP4-201ENST00000378026 MYRIPQ8NFW9 859 aa19.33■□□□□ 0.68
CKAP4-201ENST00000378026 DEPDC5O75140 1603 aa19.32■□□□□ 0.68
CKAP4-201ENST00000378026 ERC2O15083 957 aa19.32■□□□□ 0.68
CKAP4-201ENST00000378026 KRT24Q2M2I5 525 aa19.32■□□□□ 0.68
CKAP4-201ENST00000378026 CFAP44Q96MT7 982 aa19.32■□□□□ 0.68
CKAP4-201ENST00000378026 PTCH1Q13635 1447 aa19.32■□□□□ 0.68
CKAP4-201ENST00000378026 ATP7AQ04656 1500 aa19.32■□□□□ 0.68
CKAP4-201ENST00000378026 USP32Q8NFA0 1604 aa19.31■□□□□ 0.68
CKAP4-201ENST00000378026 ADGRB1O14514 1584 aa19.31■□□□□ 0.68
CKAP4-201ENST00000378026 NOLC1Q14978 699 aaKnown RBP eCLIP19.31■□□□□ 0.682e-12■■■□□ 15
CKAP4-201ENST00000378026 ZNF710Q8N1W2 664 aa19.31■□□□□ 0.68
CKAP4-201ENST00000378026 PIK3R4Q99570 1358 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms