RNA–Protein interactions for RNA: ENST00000377670.8

HIF3A-205, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HIF3A, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-205ENST00000377670 DCTN1Q14203 1278 aa13.05□□□□□ -0.32
HIF3A-205ENST00000377670 NOB1Q9ULX3 412 aaKnown RBP13.05□□□□□ -0.32
HIF3A-205ENST00000377670 RPRD2Q5VT52 1461 aaKnown RBP13.04□□□□□ -0.32
HIF3A-205ENST00000377670 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.04□□□□□ -0.32
HIF3A-205ENST00000377670 ASXL2Q76L83 1435 aa13.04□□□□□ -0.32
HIF3A-205ENST00000377670 DISP3Q9P2K9 1392 aa13.04□□□□□ -0.32
HIF3A-205ENST00000377670 TPM2P07951 284 aa13.04□□□□□ -0.32
HIF3A-205ENST00000377670 NFKBIBQ15653 356 aa13.04□□□□□ -0.32
HIF3A-205ENST00000377670 SYCP2Q9BX26 1530 aa13.04□□□□□ -0.32
HIF3A-205ENST00000377670 LMTK3Q96Q04 1460 aa13.04□□□□□ -0.32
HIF3A-205ENST00000377670 TWISTNBQ3B726 338 aaPredicted RBP13.04□□□□□ -0.32
HIF3A-205ENST00000377670 CCDC30Q5VVM6 783 aa13.04□□□□□ -0.32
HIF3A-205ENST00000377670 RPGRIP1LQ68CZ1 1315 aa13.04□□□□□ -0.32
HIF3A-205ENST00000377670 TPM3P06753 285 aa13.03□□□□□ -0.32
HIF3A-205ENST00000377670 CLEC11AQ9Y240 323 aa13.03□□□□□ -0.32
HIF3A-205ENST00000377670 CTTNBP2Q8WZ74 1663 aa13.03□□□□□ -0.32
HIF3A-205ENST00000377670 TRAPPC8Q9Y2L5 1435 aa13.03□□□□□ -0.32
HIF3A-205ENST00000377670 ADAMTS12P58397 1594 aa13.03□□□□□ -0.32
HIF3A-205ENST00000377670 FOXO3O43524 673 aa13.03□□□□□ -0.32
HIF3A-205ENST00000377670 ZKSCAN1P17029 563 aaPredicted RBP13.02□□□□□ -0.32
HIF3A-205ENST00000377670 RALYLQ86SE5 291 aaKnown RBP13.02□□□□□ -0.32
HIF3A-205ENST00000377670 EMILIN1Q9Y6C2 1016 aa13.02□□□□□ -0.32
HIF3A-205ENST00000377670 CCDC61Q9Y6R9 512 aa13.02□□□□□ -0.32
HIF3A-205ENST00000377670 UBTFL1P0CB47 393 aaPredicted RBP13.02□□□□□ -0.32
HIF3A-205ENST00000377670 EIF4G3O43432 1585 aaKnown RBP13.02□□□□□ -0.33
HIF3A-205ENST00000377670 GOLGA6L19H0YKK7 550 aa13.02□□□□□ -0.33
HIF3A-205ENST00000377670 USHBP1Q8N6Y0 703 aa13.02□□□□□ -0.33
HIF3A-205ENST00000377670 PAF1Q8N7H5 531 aa13.02□□□□□ -0.33
HIF3A-205ENST00000377670 IL27Q8NEV9 243 aa13.02□□□□□ -0.33
HIF3A-205ENST00000377670 MPHOSPH10O00566 681 aaKnown RBP13.01□□□□□ -0.33
HIF3A-205ENST00000377670 PKNOX2Q96KN3 472 aa13.01□□□□□ -0.33
HIF3A-205ENST00000377670 BRPF3Q9ULD4 1205 aa13.01□□□□□ -0.33
HIF3A-205ENST00000377670 AMOTL2Q9Y2J4 779 aa13.01□□□□□ -0.33
HIF3A-205ENST00000377670 ERC2O15083 957 aa13.01□□□□□ -0.33
HIF3A-205ENST00000377670 PHF8Q9UPP1 1060 aa13.01□□□□□ -0.33
HIF3A-205ENST00000377670 MCTP1Q6DN14 999 aa13.01□□□□□ -0.33
HIF3A-205ENST00000377670 DENND4BO75064 1496 aaPredicted RBP13.01□□□□□ -0.33
HIF3A-205ENST00000377670 MYCNP04198 464 aaPredicted RBP13.01□□□□□ -0.33
HIF3A-205ENST00000377670 SLC4A2P04920 1241 aa13.01□□□□□ -0.33
HIF3A-205ENST00000377670 HSPA2P54652 639 aa13.01□□□□□ -0.33
HIF3A-205ENST00000377670 KIAA0556O60303 1618 aa13.01□□□□□ -0.33
HIF3A-205ENST00000377670 DHX29Q7Z478 1369 aaKnown RBP13□□□□□ -0.33
HIF3A-205ENST00000377670 RPGRQ92834 1020 aaKnown RBP13□□□□□ -0.33
HIF3A-205ENST00000377670 CHMP5Q9NZZ3 219 aa13□□□□□ -0.33
HIF3A-205ENST00000377670 RNF20Q5VTR2 975 aa13□□□□□ -0.33
HIF3A-205ENST00000377670 MYL6BP14649 208 aa13□□□□□ -0.33
HIF3A-205ENST00000377670 TEX14Q8IWB6 1497 aa13□□□□□ -0.33
HIF3A-205ENST00000377670 C20orf194Q5TEA3 1177 aa13□□□□□ -0.33
HIF3A-205ENST00000377670 MCM10Q7L590 875 aa13□□□□□ -0.33
HIF3A-205ENST00000377670 BECN2A8MW95 431 aa12.99□□□□□ -0.33
HIF3A-205ENST00000377670 TTC39AQ5SRH9 613 aa12.99□□□□□ -0.33
HIF3A-205ENST00000377670 KRT28Q7Z3Y7 464 aa12.99□□□□□ -0.33
HIF3A-205ENST00000377670 IGHMBP2P38935 993 aaKnown RBP12.99□□□□□ -0.33
HIF3A-205ENST00000377670 MPRIPQ6WCQ1 1025 aa12.99□□□□□ -0.33
HIF3A-205ENST00000377670 PLCH2O75038 1416 aa12.99□□□□□ -0.33
HIF3A-205ENST00000377670 GPS2Q13227 327 aa12.98□□□□□ -0.33
HIF3A-205ENST00000377670 CCDC158Q5M9N0 1113 aa12.98□□□□□ -0.33
HIF3A-205ENST00000377670 ANO2Q9NQ90 1003 aa12.98□□□□□ -0.33
HIF3A-205ENST00000377670 SART3Q15020 963 aaKnown RBP12.98□□□□□ -0.33
HIF3A-205ENST00000377670 ZNF622Q969S3 477 aaKnown RBP eCLIP12.98□□□□□ -0.33
HIF3A-205ENST00000377670 BRMS1Q9HCU9 246 aa12.97□□□□□ -0.33
HIF3A-205ENST00000377670 ATAD2Q6PL18 1390 aa12.97□□□□□ -0.33
HIF3A-205ENST00000377670 PTCD1O75127 700 aaKnown RBP12.97□□□□□ -0.33
HIF3A-205ENST00000377670 IBSPP21815 317 aaPredicted RBP12.97□□□□□ -0.33
HIF3A-205ENST00000377670 SAFBQ15424 915 aaKnown RBP eCLIP12.97□□□□□ -0.33
HIF3A-205ENST00000377670 CCDC57Q2TAC2 916 aa12.97□□□□□ -0.33
HIF3A-205ENST00000377670 WDR62O43379 1518 aa12.97□□□□□ -0.33
HIF3A-205ENST00000377670 TMPOP42166 694 aaKnown RBP12.97□□□□□ -0.33
HIF3A-205ENST00000377670 TSR1Q2NL82 804 aaKnown RBP12.97□□□□□ -0.33
HIF3A-205ENST00000377670 TMEM87AQ8NBN3 555 aa12.97□□□□□ -0.33
HIF3A-205ENST00000377670 ATP6V1DQ9Y5K8 247 aa12.97□□□□□ -0.33
HIF3A-205ENST00000377670 KDM5BQ9UGL1 1544 aa12.97□□□□□ -0.33
HIF3A-205ENST00000377670 TEX35Q5T0J7 233 aa12.96□□□□□ -0.33
HIF3A-205ENST00000377670 WDR78Q5VTH9 848 aa12.96□□□□□ -0.33
HIF3A-205ENST00000377670 PDZRN3Q9UPQ7 1066 aa12.96□□□□□ -0.33
HIF3A-205ENST00000377670 DISP1Q96F81 1524 aa12.96□□□□□ -0.33
HIF3A-205ENST00000377670 FAM135AQ9P2D6 1515 aa12.96□□□□□ -0.33
HIF3A-205ENST00000377670 RFC4P35249 363 aa12.96□□□□□ -0.33
HIF3A-205ENST00000377670 PATL2C9JE40 543 aaKnown RBP12.96□□□□□ -0.34
HIF3A-205ENST00000377670 HDGFL1Q5TGJ6 251 aa12.96□□□□□ -0.34
HIF3A-205ENST00000377670 ANKIB1Q9P2G1 1089 aa12.96□□□□□ -0.34
HIF3A-205ENST00000377670 SPDYE4A6NLX3 237 aa12.95□□□□□ -0.34
HIF3A-205ENST00000377670 C14orf93Q9H972 538 aaKnown RBP12.95□□□□□ -0.34
HIF3A-205ENST00000377670 BTBD11A6QL63 1104 aa12.95□□□□□ -0.34
HIF3A-205ENST00000377670 XBP1P17861 261 aa12.95□□□□□ -0.34
HIF3A-205ENST00000377670 DNAJC2Q99543 621 aaKnown RBP12.94□□□□□ -0.34
HIF3A-205ENST00000377670 WASLO00401 505 aaPredicted RBP12.94□□□□□ -0.34
HIF3A-205ENST00000377670 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.94□□□□□ -0.34
HIF3A-205ENST00000377670 SURF6O75683 361 aaKnown RBP12.94□□□□□ -0.34
HIF3A-205ENST00000377670 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.94□□□□□ -0.34
HIF3A-205ENST00000377670 SLFN5Q08AF3 891 aa12.94□□□□□ -0.34
HIF3A-205ENST00000377670 MRE11P49959 708 aa12.93□□□□□ -0.34
HIF3A-205ENST00000377670 PCMTD1Q96MG8 357 aaPredicted RBP12.93□□□□□ -0.34
HIF3A-205ENST00000377670 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.93□□□□□ -0.34
HIF3A-205ENST00000377670 RRP12Q5JTH9 1297 aaKnown RBP12.93□□□□□ -0.34
HIF3A-205ENST00000377670 CHMP4BP1P59074 171 aa12.93□□□□□ -0.34
HIF3A-205ENST00000377670 BEGAINQ9BUH8 593 aa12.93□□□□□ -0.34
HIF3A-205ENST00000377670 HOMER1Q86YM7 354 aa12.92□□□□□ -0.34
HIF3A-205ENST00000377670 ZRANB1Q9UGI0 708 aa12.92□□□□□ -0.34
HIF3A-205ENST00000377670 WDR7Q9Y4E6 1490 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms