RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 KIF20BQ96Q89 1820 aa20.44■□□□□ 0.86
SDC4-201ENST00000372733 VAMP4O75379 141 aa20.43■□□□□ 0.86
SDC4-201ENST00000372733 BRPF1P55201 1214 aaPredicted RBP20.43■□□□□ 0.86
SDC4-201ENST00000372733 PIK3R4Q99570 1358 aa20.43■□□□□ 0.86
SDC4-201ENST00000372733 CDK19Q9BWU1 502 aa20.43■□□□□ 0.86
SDC4-201ENST00000372733 K7ELQ4 463 aaPredicted RBP20.42■□□□□ 0.86
SDC4-201ENST00000372733 ISY1Q9ULR0 285 aaKnown RBP20.42■□□□□ 0.86
SDC4-201ENST00000372733 NFE2L2Q16236 605 aa20.41■□□□□ 0.86
SDC4-201ENST00000372733 ZNF428Q96B54 188 aa20.41■□□□□ 0.86
SDC4-201ENST00000372733 POLKQ9UBT6 870 aa20.41■□□□□ 0.86
SDC4-201ENST00000372733 GAS2L2Q8NHY3 880 aa20.41■□□□□ 0.86
SDC4-201ENST00000372733 DIP2CQ9Y2E4 1556 aa20.41■□□□□ 0.86
SDC4-201ENST00000372733 SSFA2P28290 1259 aa20.4■□□□□ 0.86
SDC4-201ENST00000372733 NPM1P06748 294 aaKnown RBP eCLIP20.4■□□□□ 0.86
SDC4-201ENST00000372733 ARHGAP31Q2M1Z3 1444 aa20.4■□□□□ 0.86
SDC4-201ENST00000372733 ABCC4O15439 1325 aa20.4■□□□□ 0.86
SDC4-201ENST00000372733 ESPNB1AK53 854 aa20.4■□□□□ 0.86
SDC4-201ENST00000372733 ARHGEF40Q8TER5 1519 aa20.39■□□□□ 0.85
SDC4-201ENST00000372733 ARHGAP45Q92619 1136 aa20.39■□□□□ 0.85
SDC4-201ENST00000372733 MBIPQ9NS73 344 aa20.39■□□□□ 0.85
SDC4-201ENST00000372733 SLC52A1Q9NWF4 448 aa20.39■□□□□ 0.85
SDC4-201ENST00000372733 TMEM131LA2VDJ0 1609 aa20.38■□□□□ 0.85
SDC4-201ENST00000372733 CDC45O75419 566 aa20.37■□□□□ 0.85
SDC4-201ENST00000372733 GSPT1P15170 499 aaKnown RBP20.37■□□□□ 0.85
SDC4-201ENST00000372733 SKOR2Q2VWA4 1001 aaPredicted RBP20.37■□□□□ 0.85
SDC4-201ENST00000372733 CHMP4BQ9H444 224 aaKnown RBP20.37■□□□□ 0.85
SDC4-201ENST00000372733 EMILIN1Q9Y6C2 1016 aa20.37■□□□□ 0.85
SDC4-201ENST00000372733 GNAI1P63096 354 aa20.36■□□□□ 0.85
SDC4-201ENST00000372733 IFT57Q9NWB7 429 aa20.36■□□□□ 0.85
SDC4-201ENST00000372733 TWISTNBQ3B726 338 aaPredicted RBP20.35■□□□□ 0.85
SDC4-201ENST00000372733 C8orf58Q8NAV2 365 aa20.35■□□□□ 0.85
SDC4-201ENST00000372733 TRIM44Q96DX7 344 aaPredicted RBP20.35■□□□□ 0.85
SDC4-201ENST00000372733 CALD1Q05682 793 aaKnown RBP20.34■□□□□ 0.85
SDC4-201ENST00000372733 ZNF853P0CG23 659 aa20.34■□□□□ 0.85
SDC4-201ENST00000372733 ALKQ9UM73 1620 aa20.34■□□□□ 0.85
SDC4-201ENST00000372733 PREX1Q8TCU6 1659 aa20.33■□□□□ 0.85
SDC4-201ENST00000372733 KNDC1Q76NI1 1749 aa20.33■□□□□ 0.85
SDC4-201ENST00000372733 PTMSP20962 102 aa20.33■□□□□ 0.84
SDC4-201ENST00000372733 REREQ9P2R6 1566 aa20.32■□□□□ 0.84
SDC4-201ENST00000372733 PLEKHM2Q8IWE5 1019 aa20.32■□□□□ 0.84
SDC4-201ENST00000372733 YEATS2Q9ULM3 1422 aa20.31■□□□□ 0.84
SDC4-201ENST00000372733 FAM83GA6ND36 823 aa20.31■□□□□ 0.84
SDC4-201ENST00000372733 BAG4O95429 457 aaKnown RBP20.31■□□□□ 0.84
SDC4-201ENST00000372733 IL13P35225 146 aa20.31■□□□□ 0.84
SDC4-201ENST00000372733 WAPLQ7Z5K2 1190 aa20.31■□□□□ 0.84
SDC4-201ENST00000372733 MAP2P11137 1827 aaKnown RBP20.31■□□□□ 0.84
SDC4-201ENST00000372733 FBXO31Q5XUX0 539 aaPredicted RBP20.3■□□□□ 0.84
SDC4-201ENST00000372733 OSCARQ8IYS5 282 aa20.3■□□□□ 0.84
SDC4-201ENST00000372733 API5Q9BZZ5 524 aaKnown RBP20.3■□□□□ 0.84
SDC4-201ENST00000372733 ZRANB1Q9UGI0 708 aa20.3■□□□□ 0.84
SDC4-201ENST00000372733 ATP7BP35670 1465 aa20.3■□□□□ 0.84
SDC4-201ENST00000372733 GOLGA6L22H0YM25 854 aa20.29■□□□□ 0.84
SDC4-201ENST00000372733 DCTN1Q14203 1278 aa20.29■□□□□ 0.84
SDC4-201ENST00000372733 NME9Q86XW9 330 aa20.29■□□□□ 0.84
SDC4-201ENST00000372733 DDX49Q9Y6V7 483 aaKnown RBP20.29■□□□□ 0.84
SDC4-201ENST00000372733 C16orf71Q8IYS4 520 aaPredicted RBP20.29■□□□□ 0.84
SDC4-201ENST00000372733 RIMS2Q9UQ26 1411 aa20.29■□□□□ 0.84
SDC4-201ENST00000372733 CFAP44Q96MT7 982 aa20.28■□□□□ 0.84
SDC4-201ENST00000372733 NEO1Q92859 1461 aa20.28■□□□□ 0.84
SDC4-201ENST00000372733 TTC22Q5TAA0 569 aa20.28■□□□□ 0.84
SDC4-201ENST00000372733 OTUD7AQ8TE49 926 aaPredicted RBP20.28■□□□□ 0.84
SDC4-201ENST00000372733 AK9Q5TCS8 1911 aa20.28■□□□□ 0.84
SDC4-201ENST00000372733 RABEP1Q15276 862 aa20.27■□□□□ 0.84
SDC4-201ENST00000372733 KLHL40Q2TBA0 621 aa20.27■□□□□ 0.84
SDC4-201ENST00000372733 CLEC17AQ6ZS10 378 aa20.27■□□□□ 0.84
SDC4-201ENST00000372733 CDK12Q9NYV4 1490 aaPredicted RBP20.27■□□□□ 0.84
SDC4-201ENST00000372733 NASPP49321 788 aaPredicted RBP20.27■□□□□ 0.84
SDC4-201ENST00000372733 DLG5Q8TDM6 1919 aa20.26■□□□□ 0.83
SDC4-201ENST00000372733 DCTPP1Q9H773 170 aa20.26■□□□□ 0.83
SDC4-201ENST00000372733 RRS1Q15050 365 aaKnown RBP20.25■□□□□ 0.83
SDC4-201ENST00000372733 MCTP1Q6DN14 999 aa20.25■□□□□ 0.83
SDC4-201ENST00000372733 ATP10DQ9P241 1426 aa20.25■□□□□ 0.83
SDC4-201ENST00000372733 PKP1Q13835 747 aa20.24■□□□□ 0.83
SDC4-201ENST00000372733 STAG3Q9UJ98 1225 aa20.24■□□□□ 0.83
SDC4-201ENST00000372733 LMOD3Q0VAK6 560 aa20.24■□□□□ 0.83
SDC4-201ENST00000372733 CCDC173Q0VFZ6 552 aa20.24■□□□□ 0.83
SDC4-201ENST00000372733 APBB1O00213 710 aa20.23■□□□□ 0.83
SDC4-201ENST00000372733 KRT24Q2M2I5 525 aa20.23■□□□□ 0.83
SDC4-201ENST00000372733 USP26Q9BXU7 913 aa20.23■□□□□ 0.83
SDC4-201ENST00000372733 RICTORQ6R327 1708 aa20.23■□□□□ 0.83
SDC4-201ENST00000372733 EDC4Q6P2E9 1401 aaKnown RBP20.23■□□□□ 0.83
SDC4-201ENST00000372733 IBTKQ9P2D0 1353 aaPredicted RBP20.22■□□□□ 0.83
SDC4-201ENST00000372733 PPP1R9BQ96SB3 815 aa20.22■□□□□ 0.83
SDC4-201ENST00000372733 SMARCA5O60264 1052 aaPredicted RBP20.22■□□□□ 0.83
SDC4-201ENST00000372733 ANKRD44Q8N8A2 993 aa20.22■□□□□ 0.83
SDC4-201ENST00000372733 KIF24Q5T7B8 1368 aa20.21■□□□□ 0.83
SDC4-201ENST00000372733 RGS12O14924 1447 aa20.21■□□□□ 0.83
SDC4-201ENST00000372733 NCLP19338 710 aaKnown RBP20.21■□□□□ 0.83
SDC4-201ENST00000372733 INTS3Q68E01 1043 aaKnown RBP20.21■□□□□ 0.83
SDC4-201ENST00000372733 CAVIN1Q6NZI2 390 aaKnown RBP20.21■□□□□ 0.83
SDC4-201ENST00000372733 CYP2E1P05181 493 aaPredicted RBP20.21■□□□□ 0.83
SDC4-201ENST00000372733 HSP90AA2PQ14568 343 aaPredicted RBP20.21■□□□□ 0.83
SDC4-201ENST00000372733 MSH6P52701 1360 aa20.2■□□□□ 0.82
SDC4-201ENST00000372733 CPSF1Q10570 1443 aaKnown RBP20.2■□□□□ 0.82
SDC4-201ENST00000372733 SDSP20132 328 aa20.2■□□□□ 0.82
SDC4-201ENST00000372733 NUCB2P80303 420 aa20.2■□□□□ 0.82
SDC4-201ENST00000372733 CEP85Q6P2H3 762 aa20.2■□□□□ 0.82
SDC4-201ENST00000372733 NCKAP5LQ9HCH0 1330 aa20.2■□□□□ 0.82
SDC4-201ENST00000372733 DLC1Q96QB1 1528 aa20.19■□□□□ 0.82
SDC4-201ENST00000372733 ZGPATQ8N5A5 531 aaKnown RBP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms