RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 PDILTQ8N807 584 aa11.77□□□□□ -0.53
COL4A6-202ENST00000372216 HOOK1Q9UJC3 728 aaKnown RBP11.77□□□□□ -0.53
COL4A6-202ENST00000372216 SKOR2Q2VWA4 1001 aaPredicted RBP11.76□□□□□ -0.53
COL4A6-202ENST00000372216 PLCD3Q8N3E9 789 aa11.76□□□□□ -0.53
COL4A6-202ENST00000372216 SIL1Q9H173 461 aa11.76□□□□□ -0.53
COL4A6-202ENST00000372216 BRMS1Q9HCU9 246 aa11.76□□□□□ -0.53
COL4A6-202ENST00000372216 ZNF219Q9P2Y4 722 aaPredicted RBP11.76□□□□□ -0.53
COL4A6-202ENST00000372216 HOMER1Q86YM7 354 aa11.76□□□□□ -0.53
COL4A6-202ENST00000372216 KCNH5Q8NCM2 988 aa11.76□□□□□ -0.53
COL4A6-202ENST00000372216 CCDC97Q96F63 343 aaPredicted RBP11.76□□□□□ -0.53
COL4A6-202ENST00000372216 GRM1Q13255 1194 aa11.76□□□□□ -0.53
COL4A6-202ENST00000372216 SPDYE4A6NLX3 237 aa11.76□□□□□ -0.53
COL4A6-202ENST00000372216 SLC3A2P08195 630 aaKnown RBP11.76□□□□□ -0.53
COL4A6-202ENST00000372216 PSMA5P28066 241 aa11.76□□□□□ -0.53
COL4A6-202ENST00000372216 MATR3P43243 847 aaKnown RBP eCLIP11.76□□□□□ -0.53
COL4A6-202ENST00000372216 FBXO31Q5XUX0 539 aaPredicted RBP11.76□□□□□ -0.53
COL4A6-202ENST00000372216 ZNF608Q9ULD9 1512 aaPredicted RBP11.75□□□□□ -0.53
COL4A6-202ENST00000372216 AKNAQ7Z591 1439 aa11.75□□□□□ -0.53
COL4A6-202ENST00000372216 PIBF1Q8WXW3 757 aa11.75□□□□□ -0.53
COL4A6-202ENST00000372216 ZHX3Q9H4I2 956 aa11.75□□□□□ -0.53
COL4A6-202ENST00000372216 CCT4P50991 539 aaKnown RBP11.75□□□□□ -0.53
COL4A6-202ENST00000372216 IPO7O95373 1038 aaKnown RBP11.75□□□□□ -0.53
COL4A6-202ENST00000372216 SART3Q15020 963 aaKnown RBP11.75□□□□□ -0.53
COL4A6-202ENST00000372216 DENND4BO75064 1496 aaPredicted RBP11.75□□□□□ -0.53
COL4A6-202ENST00000372216 ANKRD20A12PQ8NF67 263 aa11.74□□□□□ -0.53
COL4A6-202ENST00000372216 C22orf23Q9BZE7 217 aa11.74□□□□□ -0.53
COL4A6-202ENST00000372216 ECM2O94769 699 aaPredicted RBP11.74□□□□□ -0.53
COL4A6-202ENST00000372216 SRCIN1Q9C0H9 1055 aa11.74□□□□□ -0.53
COL4A6-202ENST00000372216 FANCAO15360 1455 aa11.74□□□□□ -0.53
COL4A6-202ENST00000372216 XBP1P17861 261 aa11.74□□□□□ -0.53
COL4A6-202ENST00000372216 BRPF1P55201 1214 aaPredicted RBP11.74□□□□□ -0.53
COL4A6-202ENST00000372216 CCDC61Q9Y6R9 512 aa11.74□□□□□ -0.53
COL4A6-202ENST00000372216 GNAT3A8MTJ3 354 aa11.73□□□□□ -0.53
COL4A6-202ENST00000372216 HIP1O00291 1037 aa11.73□□□□□ -0.53
COL4A6-202ENST00000372216 ADAMTS2O95450 1211 aa11.73□□□□□ -0.53
COL4A6-202ENST00000372216 ZSCAN29Q8IWY8 852 aaPredicted RBP11.73□□□□□ -0.53
COL4A6-202ENST00000372216 ABCC5O15440 1437 aa11.73□□□□□ -0.53
COL4A6-202ENST00000372216 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.73□□□□□ -0.53
COL4A6-202ENST00000372216 MPHOSPH10O00566 681 aaKnown RBP11.73□□□□□ -0.53
COL4A6-202ENST00000372216 MPHOSPH8Q99549 860 aa11.73□□□□□ -0.53
COL4A6-202ENST00000372216 AMOTL2Q9Y2J4 779 aa11.73□□□□□ -0.53
COL4A6-202ENST00000372216 KRT18P05783 430 aaKnown RBP11.73□□□□□ -0.53
COL4A6-202ENST00000372216 CCDC57Q2TAC2 916 aa11.73□□□□□ -0.53
COL4A6-202ENST00000372216 MAP4K4O95819 1239 aaPredicted RBP11.72□□□□□ -0.53
COL4A6-202ENST00000372216 BCAR3O75815 825 aa11.72□□□□□ -0.53
COL4A6-202ENST00000372216 WDR63Q8IWG1 891 aa11.72□□□□□ -0.53
COL4A6-202ENST00000372216 CDK5RAP3Q96JB5 506 aa11.72□□□□□ -0.53
COL4A6-202ENST00000372216 OFD1O75665 1012 aa11.71□□□□□ -0.53
COL4A6-202ENST00000372216 NAIPQ13075 1403 aa11.71□□□□□ -0.53
COL4A6-202ENST00000372216 CEBPZQ03701 1054 aaKnown RBP11.71□□□□□ -0.53
COL4A6-202ENST00000372216 USHBP1Q8N6Y0 703 aa11.71□□□□□ -0.53
COL4A6-202ENST00000372216 TMOD3Q9NYL9 352 aa11.71□□□□□ -0.53
COL4A6-202ENST00000372216 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.71□□□□□ -0.54
COL4A6-202ENST00000372216 GCC1Q96CN9 775 aa11.71□□□□□ -0.54
COL4A6-202ENST00000372216 FCHSD2O94868 740 aa11.7□□□□□ -0.54
COL4A6-202ENST00000372216 TTLL12Q14166 644 aaPredicted RBP11.7□□□□□ -0.54
COL4A6-202ENST00000372216 STARD3NLO95772 234 aa11.7□□□□□ -0.54
COL4A6-202ENST00000372216 LRRCC1Q9C099 1032 aa11.7□□□□□ -0.54
COL4A6-202ENST00000372216 PDZRN3Q9UPQ7 1066 aa11.7□□□□□ -0.54
COL4A6-202ENST00000372216 ANKRD62A6NC57 917 aa11.7□□□□□ -0.54
COL4A6-202ENST00000372216 CAGE1Q8TC20 777 aa11.7□□□□□ -0.54
COL4A6-202ENST00000372216 CCDC85AQ96PX6 553 aaPredicted RBP11.7□□□□□ -0.54
COL4A6-202ENST00000372216 PHF8Q9UPP1 1060 aa11.7□□□□□ -0.54
COL4A6-202ENST00000372216 MIS18AQ9NYP9 233 aa11.7□□□□□ -0.54
COL4A6-202ENST00000372216 CHMP5Q9NZZ3 219 aa11.7□□□□□ -0.54
COL4A6-202ENST00000372216 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.7□□□□□ -0.54
COL4A6-202ENST00000372216 NFE2L2Q16236 605 aa11.7□□□□□ -0.54
COL4A6-202ENST00000372216 CCDC73Q6ZRK6 1079 aa11.7□□□□□ -0.54
COL4A6-202ENST00000372216 UNC13AQ9UPW8 1703 aa11.69□□□□□ -0.54
COL4A6-202ENST00000372216 SASS6Q6UVJ0 657 aa11.69□□□□□ -0.54
COL4A6-202ENST00000372216 RUFY1Q96T51 708 aa11.69□□□□□ -0.54
COL4A6-202ENST00000372216 NME9Q86XW9 330 aa11.69□□□□□ -0.54
COL4A6-202ENST00000372216 NUCB2P80303 420 aa11.69□□□□□ -0.54
COL4A6-202ENST00000372216 ZNF771Q7L3S4 317 aaPredicted RBP11.69□□□□□ -0.54
COL4A6-202ENST00000372216 PPP6R1Q9UPN7 881 aa11.69□□□□□ -0.54
COL4A6-202ENST00000372216 CA8P35219 290 aa11.69□□□□□ -0.54
COL4A6-202ENST00000372216 MCM10Q7L590 875 aa11.68□□□□□ -0.54
COL4A6-202ENST00000372216 AACSQ86V21 672 aa11.68□□□□□ -0.54
COL4A6-202ENST00000372216 FKBP4Q02790 459 aaKnown RBP eCLIP11.68□□□□□ -0.54
COL4A6-202ENST00000372216 ADGRF5Q8IZF2 1346 aa11.68□□□□□ -0.54
COL4A6-202ENST00000372216 WDR97A6NE52 1622 aa11.67□□□□□ -0.54
COL4A6-202ENST00000372216 FOXO3O43524 673 aa11.67□□□□□ -0.54
COL4A6-202ENST00000372216 WWC3Q9ULE0 1092 aa11.67□□□□□ -0.54
COL4A6-202ENST00000372216 WASLO00401 505 aaPredicted RBP11.67□□□□□ -0.54
COL4A6-202ENST00000372216 IGHMBP2P38935 993 aaKnown RBP11.67□□□□□ -0.54
COL4A6-202ENST00000372216 NACAP1Q9BZK3 213 aa11.67□□□□□ -0.54
COL4A6-202ENST00000372216 LRPPRCP42704 1394 aaKnown RBP11.67□□□□□ -0.54
COL4A6-202ENST00000372216 CT47B1P0C2W7 299 aaPredicted RBP11.67□□□□□ -0.54
COL4A6-202ENST00000372216 NOS1P29475 1434 aa11.67□□□□□ -0.54
COL4A6-202ENST00000372216 PTCD1O75127 700 aaKnown RBP11.67□□□□□ -0.54
COL4A6-202ENST00000372216 ZPR1O75312 459 aa11.67□□□□□ -0.54
COL4A6-202ENST00000372216 IDI1Q13907 227 aa11.67□□□□□ -0.54
COL4A6-202ENST00000372216 PDE3AQ14432 1141 aa11.67□□□□□ -0.54
COL4A6-202ENST00000372216 AK7Q96M32 723 aa11.67□□□□□ -0.54
COL4A6-202ENST00000372216 SEPT11Q9NVA2 429 aaKnown RBP11.67□□□□□ -0.54
COL4A6-202ENST00000372216 STK3Q13188 491 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 ZSCAN25Q6NSZ9 544 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 DMRT2Q9Y5R5 561 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 BIVM-ERCC5R4GMW8 1640 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 SYCP1Q15431 976 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms