RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 TMPOP42166 694 aaKnown RBP14.04□□□□□ -0.16
SYNE1-204ENST00000367248 ATF7IPQ6VMQ6 1270 aa14.03□□□□□ -0.16
SYNE1-204ENST00000367248 C11orf95C9JLR9 678 aaPredicted RBP14.03□□□□□ -0.16
SYNE1-204ENST00000367248 TOM1O60784 492 aa14.03□□□□□ -0.16
SYNE1-204ENST00000367248 BTBD11A6QL63 1104 aa14.03□□□□□ -0.16
SYNE1-204ENST00000367248 TEX14Q8IWB6 1497 aa14.03□□□□□ -0.16
SYNE1-204ENST00000367248 GOLGA6L3A6NEY3 463 aa14.03□□□□□ -0.16
SYNE1-204ENST00000367248 RALYLQ86SE5 291 aaKnown RBP14.03□□□□□ -0.16
SYNE1-204ENST00000367248 ZPR1O75312 459 aa14.03□□□□□ -0.16
SYNE1-204ENST00000367248 GRM1Q13255 1194 aa14.03□□□□□ -0.16
SYNE1-204ENST00000367248 ERC1Q8IUD2 1116 aa14.03□□□□□ -0.16
SYNE1-204ENST00000367248 C1orf115Q9H7X2 142 aa14.03□□□□□ -0.16
SYNE1-204ENST00000367248 DDX11L8A8MPP1 907 aa14.03□□□□□ -0.16
SYNE1-204ENST00000367248 DEKP35659 375 aaKnown RBP14.02□□□□□ -0.16
SYNE1-204ENST00000367248 GCC1Q96CN9 775 aa14.02□□□□□ -0.16
SYNE1-204ENST00000367248 TMOD3Q9NYL9 352 aa14.02□□□□□ -0.16
SYNE1-204ENST00000367248 TBC1D2BQ9UPU7 963 aa14.02□□□□□ -0.16
SYNE1-204ENST00000367248 KDM5BQ9UGL1 1544 aa14.02□□□□□ -0.16
SYNE1-204ENST00000367248 THOC2Q8NI27 1593 aaKnown RBP14.02□□□□□ -0.17
SYNE1-204ENST00000367248 GNAT3A8MTJ3 354 aa14.02□□□□□ -0.17
SYNE1-204ENST00000367248 RPRD2Q5VT52 1461 aaKnown RBP14.02□□□□□ -0.17
SYNE1-204ENST00000367248 CEP89Q96ST8 783 aa14.02□□□□□ -0.17
SYNE1-204ENST00000367248 SCAF11Q99590 1463 aaKnown RBP14.01□□□□□ -0.17
SYNE1-204ENST00000367248 KRT28Q7Z3Y7 464 aa14.01□□□□□ -0.17
SYNE1-204ENST00000367248 PDZRN3Q9UPQ7 1066 aa14.01□□□□□ -0.17
SYNE1-204ENST00000367248 DDX49Q9Y6V7 483 aaKnown RBP14.01□□□□□ -0.17
SYNE1-204ENST00000367248 WDR97A6NE52 1622 aa14.01□□□□□ -0.17
SYNE1-204ENST00000367248 CADPS2Q86UW7 1296 aa14□□□□□ -0.17
SYNE1-204ENST00000367248 CNTROBQ8N137 903 aa14□□□□□ -0.17
SYNE1-204ENST00000367248 C22orf23Q9BZE7 217 aa14□□□□□ -0.17
SYNE1-204ENST00000367248 WDR7Q9Y4E6 1490 aa14□□□□□ -0.17
SYNE1-204ENST00000367248 THUMPD2Q9BTF0 503 aaKnown RBP14□□□□□ -0.17
SYNE1-204ENST00000367248 TTC39AQ5SRH9 613 aa14□□□□□ -0.17
SYNE1-204ENST00000367248 NINLQ9Y2I6 1382 aa13.99□□□□□ -0.17
SYNE1-204ENST00000367248 FBXO3Q9UK99 471 aa13.99□□□□□ -0.17
SYNE1-204ENST00000367248 A2MP01023 1474 aa13.99□□□□□ -0.17
SYNE1-204ENST00000367248 MYCNP04198 464 aaPredicted RBP13.99□□□□□ -0.17
SYNE1-204ENST00000367248 TTLL12Q14166 644 aaPredicted RBP13.99□□□□□ -0.17
SYNE1-204ENST00000367248 AMOTQ4VCS5 1084 aa13.99□□□□□ -0.17
SYNE1-204ENST00000367248 EXOC5O00471 708 aa13.99□□□□□ -0.17
SYNE1-204ENST00000367248 MCM10Q7L590 875 aa13.99□□□□□ -0.17
SYNE1-204ENST00000367248 ACSBG1Q96GR2 724 aa13.99□□□□□ -0.17
SYNE1-204ENST00000367248 TMEM132AQ24JP5 1023 aa13.98□□□□□ -0.17
SYNE1-204ENST00000367248 TRAPPC8Q9Y2L5 1435 aa13.98□□□□□ -0.17
SYNE1-204ENST00000367248 FAM135AQ9P2D6 1515 aa13.98□□□□□ -0.17
SYNE1-204ENST00000367248 MVPQ14764 893 aaKnown RBP13.98□□□□□ -0.17
SYNE1-204ENST00000367248 SLFN5Q08AF3 891 aa13.98□□□□□ -0.17
SYNE1-204ENST00000367248 UHRF1BP1LA0JNW5 1464 aa13.98□□□□□ -0.17
SYNE1-204ENST00000367248 ZNF518AQ6AHZ1 1483 aa13.97□□□□□ -0.17
SYNE1-204ENST00000367248 CHMP4BP1P59074 171 aa13.97□□□□□ -0.17
SYNE1-204ENST00000367248 SMC3Q9UQE7 1217 aa13.97□□□□□ -0.17
SYNE1-204ENST00000367248 PTPRKQ15262 1439 aa13.97□□□□□ -0.17
SYNE1-204ENST00000367248 ATP2B1P20020 1258 aa13.97□□□□□ -0.17
SYNE1-204ENST00000367248 CCDC57Q2TAC2 916 aa13.97□□□□□ -0.17
SYNE1-204ENST00000367248 VPS37CA5D8V6 355 aaPredicted RBP13.97□□□□□ -0.17
SYNE1-204ENST00000367248 CCDC158Q5M9N0 1113 aa13.97□□□□□ -0.17
SYNE1-204ENST00000367248 GNL3LQ9NVN8 582 aaKnown RBP13.97□□□□□ -0.17
SYNE1-204ENST00000367248 CHMP5Q9NZZ3 219 aa13.97□□□□□ -0.17
SYNE1-204ENST00000367248 STARD3NLO95772 234 aa13.96□□□□□ -0.17
SYNE1-204ENST00000367248 ACEP12821 1306 aa13.96□□□□□ -0.17
SYNE1-204ENST00000367248 LRPPRCP42704 1394 aaKnown RBP13.96□□□□□ -0.17
SYNE1-204ENST00000367248 ABCC11Q96J66 1382 aa13.96□□□□□ -0.18
SYNE1-204ENST00000367248 SKOR2Q2VWA4 1001 aaPredicted RBP13.95□□□□□ -0.18
SYNE1-204ENST00000367248 DUSP27Q5VZP5 1158 aa13.95□□□□□ -0.18
SYNE1-204ENST00000367248 HIP1O00291 1037 aa13.95□□□□□ -0.18
SYNE1-204ENST00000367248 RPAP2Q8IXW5 612 aaPredicted RBP13.95□□□□□ -0.18
SYNE1-204ENST00000367248 MAP4K4O95819 1239 aaPredicted RBP13.95□□□□□ -0.18
SYNE1-204ENST00000367248 FKBP4Q02790 459 aaKnown RBP eCLIP13.95□□□□□ -0.18
SYNE1-204ENST00000367248 PCMTD1Q96MG8 357 aaPredicted RBP13.95□□□□□ -0.18
SYNE1-204ENST00000367248 NSD2O96028 1365 aa13.95□□□□□ -0.18
SYNE1-204ENST00000367248 SRGAP3O43295 1099 aa13.95□□□□□ -0.18
SYNE1-204ENST00000367248 DCTN1Q14203 1278 aa13.95□□□□□ -0.18
SYNE1-204ENST00000367248 NCKAP5LQ9HCH0 1330 aa13.95□□□□□ -0.18
SYNE1-204ENST00000367248 HMGB2P26583 209 aaKnown RBP13.95□□□□□ -0.18
SYNE1-204ENST00000367248 LRRCC1Q9C099 1032 aa13.95□□□□□ -0.18
SYNE1-204ENST00000367248 PSMA5P28066 241 aa13.94□□□□□ -0.18
SYNE1-204ENST00000367248 CABLES1Q8TDN4 633 aa13.94□□□□□ -0.18
SYNE1-204ENST00000367248 TAF7Q15545 349 aaPredicted RBP13.94□□□□□ -0.18
SYNE1-204ENST00000367248 IFT57Q9NWB7 429 aa13.94□□□□□ -0.18
SYNE1-204ENST00000367248 UGGT2Q9NYU1 1516 aa13.94□□□□□ -0.18
SYNE1-204ENST00000367248 AK7Q96M32 723 aa13.94□□□□□ -0.18
SYNE1-204ENST00000367248 SAFBQ15424 915 aaKnown RBP eCLIP13.94□□□□□ -0.18
SYNE1-204ENST00000367248 NUP160Q12769 1436 aa13.94□□□□□ -0.18
SYNE1-204ENST00000367248 ANKIB1Q9P2G1 1089 aa13.94□□□□□ -0.18
SYNE1-204ENST00000367248 CEP126Q9P2H0 1117 aa13.94□□□□□ -0.18
SYNE1-204ENST00000367248 ZNF622Q969S3 477 aaKnown RBP eCLIP13.93□□□□□ -0.18
SYNE1-204ENST00000367248 ABCC10Q5T3U5 1492 aa13.93□□□□□ -0.18
SYNE1-204ENST00000367248 TTC21BQ7Z4L5 1316 aa13.93□□□□□ -0.18
SYNE1-204ENST00000367248 BECN2A8MW95 431 aa13.93□□□□□ -0.18
SYNE1-204ENST00000367248 NUCB2P80303 420 aa13.92□□□□□ -0.18
SYNE1-204ENST00000367248 ABCF2Q9UG63 623 aa13.92□□□□□ -0.18
SYNE1-204ENST00000367248 RAPGEF6Q8TEU7 1601 aa13.92□□□□□ -0.18
SYNE1-204ENST00000367248 R3HCC1Q9Y3T6 440 aaKnown RBP13.92□□□□□ -0.18
SYNE1-204ENST00000367248 GPTP24298 496 aa13.92□□□□□ -0.18
SYNE1-204ENST00000367248 RAI14Q9P0K7 980 aa13.92□□□□□ -0.18
SYNE1-204ENST00000367248 SART3Q15020 963 aaKnown RBP13.92□□□□□ -0.18
SYNE1-204ENST00000367248 DISP3Q9P2K9 1392 aa13.91□□□□□ -0.18
SYNE1-204ENST00000367248 WDR78Q5VTH9 848 aa13.91□□□□□ -0.18
SYNE1-204ENST00000367248 BICD2Q8TD16 824 aa13.91□□□□□ -0.18
SYNE1-204ENST00000367248 MSH6P52701 1360 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms