RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-204ENST00000366290 ABCC10Q5T3U5 1492 aa12.85□□□□□ -0.35
YBX3-204ENST00000366290 IRX2Q9BZI1 471 aaPredicted RBP12.85□□□□□ -0.35
YBX3-204ENST00000366290 ADCY10Q96PN6 1610 aa12.84□□□□□ -0.35
YBX3-204ENST00000366290 DISP1Q96F81 1524 aa12.84□□□□□ -0.35
YBX3-204ENST00000366290 IRF5Q13568 498 aa12.84□□□□□ -0.35
YBX3-204ENST00000366290 CARMIL2Q6F5E8 1435 aa12.84□□□□□ -0.35
YBX3-204ENST00000366290 CTTNBP2Q8WZ74 1663 aa12.83□□□□□ -0.35
YBX3-204ENST00000366290 MAPKBP1O60336 1514 aa12.83□□□□□ -0.35
YBX3-204ENST00000366290 FAM69CQ0P6D2 419 aa12.83□□□□□ -0.36
YBX3-204ENST00000366290 PTPRNQ16849 979 aa12.83□□□□□ -0.36
YBX3-204ENST00000366290 PRDM9Q9NQV7 894 aa12.83□□□□□ -0.36
YBX3-204ENST00000366290 DXOO77932 396 aaKnown RBP12.82□□□□□ -0.36
YBX3-204ENST00000366290 PLA2G2CQ5R387 149 aa12.82□□□□□ -0.36
YBX3-204ENST00000366290 ARID3AQ99856 593 aa12.82□□□□□ -0.36
YBX3-204ENST00000366290 TNIKQ9UKE5 1360 aa12.81□□□□□ -0.36
YBX3-204ENST00000366290 DIP2BQ9P265 1576 aa12.81□□□□□ -0.36
YBX3-204ENST00000366290 PTPRGP23470 1445 aa12.8□□□□□ -0.36
YBX3-204ENST00000366290 F12P00748 615 aaPredicted RBP12.8□□□□□ -0.36
YBX3-204ENST00000366290 ARXQ96QS3 562 aa12.8□□□□□ -0.36
YBX3-204ENST00000366290 MMP16P51512 607 aa12.79□□□□□ -0.36
YBX3-204ENST00000366290 CCDC82Q8N4S0 544 aa12.79□□□□□ -0.36
YBX3-204ENST00000366290 MAP10Q9P2G4 905 aa12.79□□□□□ -0.36
YBX3-204ENST00000366290 KIAA0556O60303 1618 aa12.79□□□□□ -0.36
YBX3-204ENST00000366290 POM121CA8CG34 1229 aa12.78□□□□□ -0.36
YBX3-204ENST00000366290 LIAT1Q6ZQX7 453 aa12.78□□□□□ -0.36
YBX3-204ENST00000366290 CCNYL3P0C7X3 344 aa12.77□□□□□ -0.37
YBX3-204ENST00000366290 SLC19A1P41440 591 aa12.77□□□□□ -0.37
YBX3-204ENST00000366290 WASHC4Q2M389 1173 aa12.77□□□□□ -0.37
YBX3-204ENST00000366290 NUDT12Q9BQG2 462 aa12.77□□□□□ -0.37
YBX3-204ENST00000366290 UHRF1BP1LA0JNW5 1464 aa12.77□□□□□ -0.37
YBX3-204ENST00000366290 PNMA1Q8ND90 353 aa12.76□□□□□ -0.37
YBX3-204ENST00000366290 FCF1Q9Y324 198 aaKnown RBP12.76□□□□□ -0.37
YBX3-204ENST00000366290 GOLGA3Q08378 1498 aa12.76□□□□□ -0.37
YBX3-204ENST00000366290 CTHP32929 405 aa12.75□□□□□ -0.37
YBX3-204ENST00000366290 SPRYD7Q5W111 196 aa12.74□□□□□ -0.37
YBX3-204ENST00000366290 EVA1BQ9NVM1 165 aa12.74□□□□□ -0.37
YBX3-204ENST00000366290 KIF21BO75037 1637 aa12.73□□□□□ -0.37
YBX3-204ENST00000366290 ABCC2Q92887 1545 aa12.73□□□□□ -0.37
YBX3-204ENST00000366290 VAC14Q08AM6 782 aa12.73□□□□□ -0.37
YBX3-204ENST00000366290 FKBPLQ9UIM3 349 aa12.73□□□□□ -0.37
YBX3-204ENST00000366290 UACAQ9BZF9 1416 aa12.72□□□□□ -0.37
YBX3-204ENST00000366290 KCNH2Q12809 1159 aa12.72□□□□□ -0.37
YBX3-204ENST00000366290 GLMNQ92990 594 aa12.72□□□□□ -0.37
YBX3-204ENST00000366290 CCDC97Q96F63 343 aaPredicted RBP12.72□□□□□ -0.37
YBX3-204ENST00000366290 TRIM67Q6ZTA4 783 aa12.71□□□□□ -0.37
YBX3-204ENST00000366290 CALR3Q96L12 384 aaKnown RBP12.71□□□□□ -0.37
YBX3-204ENST00000366290 TSPOAP1O95153 1857 aa12.7□□□□□ -0.38
YBX3-204ENST00000366290 HOMEZQ8IX15 550 aa12.7□□□□□ -0.38
YBX3-204ENST00000366290 SERPINA10Q9UK55 444 aa12.7□□□□□ -0.38
YBX3-204ENST00000366290 KDM5BQ9UGL1 1544 aa12.7□□□□□ -0.38
YBX3-204ENST00000366290 SAMD9Q5K651 1589 aa12.69□□□□□ -0.38
YBX3-204ENST00000366290 ZC3H4Q9UPT8 1303 aaKnown RBP12.69□□□□□ -0.38
YBX3-204ENST00000366290 GFRA3O60609 400 aa12.69□□□□□ -0.38
YBX3-204ENST00000366290 ZNF598Q86UK7 904 aaKnown RBP12.69□□□□□ -0.38
YBX3-204ENST00000366290 KDM6BO15054 1643 aa12.69□□□□□ -0.38
YBX3-204ENST00000366290 CCDC24Q8N4L8 307 aa12.68□□□□□ -0.38
YBX3-204ENST00000366290 LAPTM4AQ15012 233 aa12.67□□□□□ -0.38
YBX3-204ENST00000366290 HDGFL1Q5TGJ6 251 aa12.67□□□□□ -0.38
YBX3-204ENST00000366290 ADAMTS19Q8TE59 1207 aa12.67□□□□□ -0.38
YBX3-204ENST00000366290 ABCA8O94911 1581 aa12.67□□□□□ -0.38
YBX3-204ENST00000366290 PPRC1Q5VV67 1664 aaKnown RBP12.67□□□□□ -0.38
YBX3-204ENST00000366290 TTBK1Q5TCY1 1321 aaPredicted RBP12.66□□□□□ -0.38
YBX3-204ENST00000366290 ASXL2Q76L83 1435 aa12.66□□□□□ -0.38
YBX3-204ENST00000366290 ZNF697Q5TEC3 545 aa12.66□□□□□ -0.38
YBX3-204ENST00000366290 ARMC2Q8NEN0 867 aa12.66□□□□□ -0.38
YBX3-204ENST00000366290 PLB1Q6P1J6 1458 aa12.65□□□□□ -0.38
YBX3-204ENST00000366290 NRG2O14511 850 aaPredicted RBP12.65□□□□□ -0.38
YBX3-204ENST00000366290 FBXO45P0C2W1 286 aa12.65□□□□□ -0.38
YBX3-204ENST00000366290 RPIAP49247 311 aa12.65□□□□□ -0.38
YBX3-204ENST00000366290 NR1H3Q13133 447 aa12.65□□□□□ -0.38
YBX3-204ENST00000366290 PDZRN3Q9UPQ7 1066 aa12.65□□□□□ -0.38
YBX3-204ENST00000366290 COL17A1Q9UMD9 1497 aaPredicted RBP12.65□□□□□ -0.38
YBX3-204ENST00000366290 GLI2P10070 1586 aa12.64□□□□□ -0.39
YBX3-204ENST00000366290 ZCCHC11Q5TAX3 1644 aaKnown RBP12.64□□□□□ -0.39
YBX3-204ENST00000366290 ZBBXA8MT70 800 aa12.64□□□□□ -0.39
YBX3-204ENST00000366290 PTCRAQ6ISU1 281 aaPredicted RBP12.64□□□□□ -0.39
YBX3-204ENST00000366290 SOX11P35716 441 aa12.63□□□□□ -0.39
YBX3-204ENST00000366290 FAM9AQ8IZU1 332 aaPredicted RBP12.63□□□□□ -0.39
YBX3-204ENST00000366290 GPKOWQ92917 476 aaPredicted RBP eCLIP12.63□□□□□ -0.39
YBX3-204ENST00000366290 UNC93B1Q9H1C4 597 aa12.63□□□□□ -0.39
YBX3-204ENST00000366290 ALG2Q9H553 416 aa12.63□□□□□ -0.39
YBX3-204ENST00000366290 LCE2BO14633 110 aa12.62□□□□□ -0.39
YBX3-204ENST00000366290 GDF9O60383 454 aa12.62□□□□□ -0.39
YBX3-204ENST00000366290 NBPF14Q5TI25 921 aa12.62□□□□□ -0.39
YBX3-204ENST00000366290 Q6ZNB5 142 aa12.62□□□□□ -0.39
YBX3-204ENST00000366290 EIF4G2P78344 907 aaKnown RBP eCLIP12.61□□□□□ -0.39
YBX3-204ENST00000366290 PRR20EP86478 221 aa12.61□□□□□ -0.39
YBX3-204ENST00000366290 PRR20CP86479 221 aa12.61□□□□□ -0.39
YBX3-204ENST00000366290 PRR20DP86480 221 aa12.61□□□□□ -0.39
YBX3-204ENST00000366290 PRR20BP86481 221 aa12.61□□□□□ -0.39
YBX3-204ENST00000366290 PRR20AP86496 221 aa12.61□□□□□ -0.39
YBX3-204ENST00000366290 PDXDC2PQ6P474 469 aa12.61□□□□□ -0.39
YBX3-204ENST00000366290 EFCAB5A4FU69 1503 aa12.61□□□□□ -0.39
YBX3-204ENST00000366290 EPRSP07814 1512 aaKnown RBP12.59□□□□□ -0.39
YBX3-204ENST00000366290 SEMA3FQ13275 785 aa12.59□□□□□ -0.39
YBX3-204ENST00000366290 PKD2L1Q9P0L9 805 aa12.59□□□□□ -0.39
YBX3-204ENST00000366290 GPSM3Q9Y4H4 160 aa12.59□□□□□ -0.39
YBX3-204ENST00000366290 PTK2Q05397 1052 aa12.58□□□□□ -0.4
YBX3-204ENST00000366290 WDR7Q9Y4E6 1490 aa12.58□□□□□ -0.4
YBX3-204ENST00000366290 MAP3K4Q9Y6R4 1608 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms