RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.74□□□□□ -0.21
SYNE1-202ENST00000347037 NPATQ14207 1427 aa13.74□□□□□ -0.21
SYNE1-202ENST00000347037 USP32Q8NFA0 1604 aa13.74□□□□□ -0.21
SYNE1-202ENST00000347037 CDC45O75419 566 aa13.74□□□□□ -0.21
SYNE1-202ENST00000347037 BAG4O95429 457 aaKnown RBP13.74□□□□□ -0.21
SYNE1-202ENST00000347037 MSNP26038 577 aaKnown RBP13.74□□□□□ -0.21
SYNE1-202ENST00000347037 TSPYL6Q8N831 410 aa13.74□□□□□ -0.21
SYNE1-202ENST00000347037 PKNOX2Q96KN3 472 aa13.74□□□□□ -0.21
SYNE1-202ENST00000347037 PPLO60437 1756 aa13.73□□□□□ -0.21
SYNE1-202ENST00000347037 KIAA1211Q6ZU35 1233 aa13.73□□□□□ -0.21
SYNE1-202ENST00000347037 APBB1O00213 710 aa13.73□□□□□ -0.21
SYNE1-202ENST00000347037 CAVIN1Q6NZI2 390 aaKnown RBP13.73□□□□□ -0.21
SYNE1-202ENST00000347037 RPGRIP1LQ68CZ1 1315 aa13.72□□□□□ -0.21
SYNE1-202ENST00000347037 CHMP4BQ9H444 224 aaKnown RBP13.72□□□□□ -0.21
SYNE1-202ENST00000347037 ZMYND15Q9H091 742 aa13.72□□□□□ -0.21
SYNE1-202ENST00000347037 ARHGEF40Q8TER5 1519 aa13.72□□□□□ -0.21
SYNE1-202ENST00000347037 AGLP35573 1532 aa13.72□□□□□ -0.21
SYNE1-202ENST00000347037 CALD1Q05682 793 aaKnown RBP13.71□□□□□ -0.21
SYNE1-202ENST00000347037 HDGFL2Q7Z4V5 671 aaPredicted RBP13.71□□□□□ -0.21
SYNE1-202ENST00000347037 SIRT2Q8IXJ6 389 aa13.71□□□□□ -0.21
SYNE1-202ENST00000347037 MRPL50Q8N5N7 158 aaKnown RBP13.71□□□□□ -0.21
SYNE1-202ENST00000347037 RAPGEF3O95398 923 aa13.71□□□□□ -0.21
SYNE1-202ENST00000347037 KLHL40Q2TBA0 621 aa13.71□□□□□ -0.22
SYNE1-202ENST00000347037 PUS7Q96PZ0 661 aaKnown RBP13.71□□□□□ -0.22
SYNE1-202ENST00000347037 PRAM1Q96QH2 718 aa13.71□□□□□ -0.22
SYNE1-202ENST00000347037 PREX1Q8TCU6 1659 aa13.71□□□□□ -0.22
SYNE1-202ENST00000347037 VAMP4O75379 141 aa13.7□□□□□ -0.22
SYNE1-202ENST00000347037 PHACTR3Q96KR7 559 aa13.7□□□□□ -0.22
SYNE1-202ENST00000347037 FCHSD2O94868 740 aa13.7□□□□□ -0.22
SYNE1-202ENST00000347037 ZSCAN30Q86W11 494 aa13.7□□□□□ -0.22
SYNE1-202ENST00000347037 MYO5BQ9ULV0 1848 aa13.7□□□□□ -0.22
SYNE1-202ENST00000347037 TPM2P07951 284 aa13.7□□□□□ -0.22
SYNE1-202ENST00000347037 ATAD2Q6PL18 1390 aa13.7□□□□□ -0.22
SYNE1-202ENST00000347037 GSPT1P15170 499 aaKnown RBP13.69□□□□□ -0.22
SYNE1-202ENST00000347037 CABP1Q9NZU7 370 aa13.69□□□□□ -0.22
SYNE1-202ENST00000347037 COL3A1P02461 1466 aaPredicted RBP13.69□□□□□ -0.22
SYNE1-202ENST00000347037 FOXD4L5Q5VV16 416 aaPredicted RBP13.69□□□□□ -0.22
SYNE1-202ENST00000347037 C16orf71Q8IYS4 520 aaPredicted RBP13.69□□□□□ -0.22
SYNE1-202ENST00000347037 FOXD4L4Q8WXT5 416 aaPredicted RBP13.69□□□□□ -0.22
SYNE1-202ENST00000347037 PKP1Q13835 747 aa13.68□□□□□ -0.22
SYNE1-202ENST00000347037 AK9Q5TCS8 1911 aa13.68□□□□□ -0.22
SYNE1-202ENST00000347037 RABEP1Q15276 862 aa13.68□□□□□ -0.22
SYNE1-202ENST00000347037 TWISTNBQ3B726 338 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-202ENST00000347037 MBIPQ9NS73 344 aa13.68□□□□□ -0.22
SYNE1-202ENST00000347037 RBM10P98175 930 aaKnown RBP13.67□□□□□ -0.22
SYNE1-202ENST00000347037 NFE2L2Q16236 605 aa13.67□□□□□ -0.22
SYNE1-202ENST00000347037 PPP1R9BQ96SB3 815 aa13.67□□□□□ -0.22
SYNE1-202ENST00000347037 PRPF40AO75400 957 aaKnown RBP13.67□□□□□ -0.22
SYNE1-202ENST00000347037 ZSCAN23Q3MJ62 389 aa13.67□□□□□ -0.22
SYNE1-202ENST00000347037 ARHGAP31Q2M1Z3 1444 aa13.67□□□□□ -0.22
SYNE1-202ENST00000347037 GNAI1P63096 354 aa13.67□□□□□ -0.22
SYNE1-202ENST00000347037 NUCB2P80303 420 aa13.67□□□□□ -0.22
SYNE1-202ENST00000347037 FAM69CQ0P6D2 419 aa13.67□□□□□ -0.22
SYNE1-202ENST00000347037 PLEKHM2Q8IWE5 1019 aa13.67□□□□□ -0.22
SYNE1-202ENST00000347037 ZNF428Q96B54 188 aa13.67□□□□□ -0.22
SYNE1-202ENST00000347037 RBM27Q9P2N5 1060 aaKnown RBP13.66□□□□□ -0.22
SYNE1-202ENST00000347037 C8orf58Q8NAV2 365 aa13.66□□□□□ -0.22
SYNE1-202ENST00000347037 ARHGAP45Q92619 1136 aa13.66□□□□□ -0.22
SYNE1-202ENST00000347037 CDK19Q9BWU1 502 aa13.66□□□□□ -0.22
SYNE1-202ENST00000347037 R3HCC1Q9Y3T6 440 aaKnown RBP13.66□□□□□ -0.22
SYNE1-202ENST00000347037 OTUD7AQ8TE49 926 aaPredicted RBP13.65□□□□□ -0.22
SYNE1-202ENST00000347037 ARHGEF28Q8N1W1 1705 aaKnown RBP13.65□□□□□ -0.22
SYNE1-202ENST00000347037 MED14O60244 1454 aa13.65□□□□□ -0.22
SYNE1-202ENST00000347037 IDI1Q13907 227 aa13.65□□□□□ -0.22
SYNE1-202ENST00000347037 ZGPATQ8N5A5 531 aaKnown RBP13.65□□□□□ -0.22
SYNE1-202ENST00000347037 CHAMP1Q96JM3 812 aa13.65□□□□□ -0.22
SYNE1-202ENST00000347037 SMARCA5O60264 1052 aaPredicted RBP13.65□□□□□ -0.23
SYNE1-202ENST00000347037 RBSNQ9H1K0 784 aa13.65□□□□□ -0.23
SYNE1-202ENST00000347037 FAM83GA6ND36 823 aa13.64□□□□□ -0.23
SYNE1-202ENST00000347037 DCTN1Q14203 1278 aa13.64□□□□□ -0.23
SYNE1-202ENST00000347037 TTC22Q5TAA0 569 aa13.64□□□□□ -0.23
SYNE1-202ENST00000347037 INTS3Q68E01 1043 aaKnown RBP13.64□□□□□ -0.23
SYNE1-202ENST00000347037 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-202ENST00000347037 API5Q9BZZ5 524 aaKnown RBP13.64□□□□□ -0.23
SYNE1-202ENST00000347037 POLKQ9UBT6 870 aa13.64□□□□□ -0.23
SYNE1-202ENST00000347037 LRRC7Q96NW7 1537 aa13.64□□□□□ -0.23
SYNE1-202ENST00000347037 CLTCQ00610 1675 aaKnown RBP13.64□□□□□ -0.23
SYNE1-202ENST00000347037 CASC1Q6TDU7 716 aa13.64□□□□□ -0.23
SYNE1-202ENST00000347037 LMBRD1Q9NUN5 540 aa13.64□□□□□ -0.23
SYNE1-202ENST00000347037 EMILIN1Q9Y6C2 1016 aa13.64□□□□□ -0.23
SYNE1-202ENST00000347037 ABCC4O15439 1325 aa13.64□□□□□ -0.23
SYNE1-202ENST00000347037 PRIM1P49642 420 aaKnown RBP13.63□□□□□ -0.23
SYNE1-202ENST00000347037 USP26Q9BXU7 913 aa13.63□□□□□ -0.23
SYNE1-202ENST00000347037 ST18O60284 1047 aa13.63□□□□□ -0.23
SYNE1-202ENST00000347037 BRPF1P55201 1214 aaPredicted RBP13.63□□□□□ -0.23
SYNE1-202ENST00000347037 IFT57Q9NWB7 429 aa13.63□□□□□ -0.23
SYNE1-202ENST00000347037 TMEM131LA2VDJ0 1609 aa13.63□□□□□ -0.23
SYNE1-202ENST00000347037 OFD1O75665 1012 aa13.63□□□□□ -0.23
SYNE1-202ENST00000347037 XPCQ01831 940 aaPredicted RBP13.63□□□□□ -0.23
SYNE1-202ENST00000347037 ARID3AQ99856 593 aa13.63□□□□□ -0.23
SYNE1-202ENST00000347037 FAM13BQ9NYF5 915 aa13.62□□□□□ -0.23
SYNE1-202ENST00000347037 ZNF445P59923 1031 aa13.62□□□□□ -0.23
SYNE1-202ENST00000347037 CLEC17AQ6ZS10 378 aa13.62□□□□□ -0.23
SYNE1-202ENST00000347037 PTCH1Q13635 1447 aa13.62□□□□□ -0.23
SYNE1-202ENST00000347037 ZBTB7CA1YPR0 619 aa13.62□□□□□ -0.23
SYNE1-202ENST00000347037 PDCL3Q9H2J4 239 aa13.61□□□□□ -0.23
SYNE1-202ENST00000347037 SDSP20132 328 aa13.61□□□□□ -0.23
SYNE1-202ENST00000347037 FAM135BQ49AJ0 1406 aa13.61□□□□□ -0.23
SYNE1-202ENST00000347037 NOL8Q76FK4 1167 aaKnown RBP13.61□□□□□ -0.23
SYNE1-202ENST00000347037 PNPLA6Q8IY17 1366 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms