RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 KDM4AO75164 1064 aa14.3□□□□□ -0.12
COL12A1-202ENST00000345356 LMAN1P49257 510 aa14.3□□□□□ -0.12
COL12A1-202ENST00000345356 RBM25P49756 843 aaKnown RBP14.3□□□□□ -0.12
COL12A1-202ENST00000345356 ZFP91Q96JP5 570 aaPredicted RBP14.3□□□□□ -0.12
COL12A1-202ENST00000345356 LRSAM1Q6UWE0 723 aa14.3□□□□□ -0.12
COL12A1-202ENST00000345356 CRACR2AQ9BSW2 395 aa14.3□□□□□ -0.12
COL12A1-202ENST00000345356 NGDNQ8NEJ9 315 aaKnown RBP14.29□□□□□ -0.12
COL12A1-202ENST00000345356 MYO6Q9UM54 1294 aa14.29□□□□□ -0.12
COL12A1-202ENST00000345356 ZNF644Q9H582 1327 aaPredicted RBP14.29□□□□□ -0.12
COL12A1-202ENST00000345356 TEFQ10587 303 aa14.29□□□□□ -0.12
COL12A1-202ENST00000345356 ANKRD1Q15327 319 aa14.29□□□□□ -0.12
COL12A1-202ENST00000345356 NUTM2FA1L443 756 aa14.29□□□□□ -0.12
COL12A1-202ENST00000345356 TRIM34Q9BYJ4 488 aa14.29□□□□□ -0.12
COL12A1-202ENST00000345356 PAXBP1Q9Y5B6 917 aa14.29□□□□□ -0.12
COL12A1-202ENST00000345356 CCDC181Q5TID7 509 aa14.29□□□□□ -0.12
COL12A1-202ENST00000345356 UVSSAQ2YD98 709 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 C8orf34Q49A92 452 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 TXLNBQ8N3L3 684 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 TMEM57Q8N5G2 664 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 PDRG1Q9NUG6 133 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 CFAP45Q9UL16 551 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 GDPD2Q9HCC8 539 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 ARAP1Q96P48 1450 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 CEP135Q66GS9 1140 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 FAM107BQ9H098 131 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 GNAI2P04899 355 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 ZSCAN31Q96LW9 406 aaPredicted RBP14.28□□□□□ -0.12
COL12A1-202ENST00000345356 PPP6R1Q9UPN7 881 aa14.28□□□□□ -0.12
COL12A1-202ENST00000345356 ZSCAN12O43309 604 aa14.27□□□□□ -0.12
COL12A1-202ENST00000345356 ATP2B1P20020 1258 aa14.27□□□□□ -0.12
COL12A1-202ENST00000345356 WWC1Q8IX03 1113 aa14.27□□□□□ -0.12
COL12A1-202ENST00000345356 SMTNL1A8MU46 457 aa14.27□□□□□ -0.12
COL12A1-202ENST00000345356 IGHDP01880 384 aa14.27□□□□□ -0.12
COL12A1-202ENST00000345356 JAKMIP3Q5VZ66 844 aa14.27□□□□□ -0.12
COL12A1-202ENST00000345356 ZNHIT6Q9NWK9 470 aaKnown RBP14.27□□□□□ -0.12
COL12A1-202ENST00000345356 CFAP100Q494V2 611 aa14.27□□□□□ -0.13
COL12A1-202ENST00000345356 ODF2Q5BJF6 829 aa14.27□□□□□ -0.13
COL12A1-202ENST00000345356 FERMT3Q86UX7 667 aa14.27□□□□□ -0.13
COL12A1-202ENST00000345356 JMYQ8N9B5 988 aa14.27□□□□□ -0.13
COL12A1-202ENST00000345356 ERICH2A1L162 156 aa14.27□□□□□ -0.13
COL12A1-202ENST00000345356 HIP1O00291 1037 aa14.27□□□□□ -0.13
COL12A1-202ENST00000345356 MAP4K4O95819 1239 aaPredicted RBP14.27□□□□□ -0.13
COL12A1-202ENST00000345356 CASQ1P31415 396 aa14.27□□□□□ -0.13
COL12A1-202ENST00000345356 HS1BP3Q53T59 392 aa14.27□□□□□ -0.13
COL12A1-202ENST00000345356 NEMFO60524 1076 aa14.26□□□□□ -0.13
COL12A1-202ENST00000345356 ARHGAP29Q52LW3 1261 aa14.26□□□□□ -0.13
COL12A1-202ENST00000345356 DDX11Q96FC9 970 aa14.26□□□□□ -0.13
COL12A1-202ENST00000345356 DACH1Q9UI36 760 aa14.26□□□□□ -0.13
COL12A1-202ENST00000345356 LRRFIP2Q9Y608 721 aaKnown RBP14.26□□□□□ -0.13
COL12A1-202ENST00000345356 LRPPRCP42704 1394 aaKnown RBP14.26□□□□□ -0.13
COL12A1-202ENST00000345356 JAKMIP1Q96N16 626 aaKnown RBP14.26□□□□□ -0.13
COL12A1-202ENST00000345356 IQCEQ6IPM2 695 aa14.26□□□□□ -0.13
COL12A1-202ENST00000345356 CKAP2LQ8IYA6 745 aa14.25□□□□□ -0.13
COL12A1-202ENST00000345356 MAGEC2Q9UBF1 373 aaPredicted RBP14.25□□□□□ -0.13
COL12A1-202ENST00000345356 PIP4K2AP48426 406 aaPredicted RBP14.25□□□□□ -0.13
COL12A1-202ENST00000345356 MNAT1P51948 309 aa14.25□□□□□ -0.13
COL12A1-202ENST00000345356 NCOA2Q15596 1464 aa14.25□□□□□ -0.13
COL12A1-202ENST00000345356 PRKAR2BP31323 418 aa14.25□□□□□ -0.13
COL12A1-202ENST00000345356 WASHC4Q2M389 1173 aa14.25□□□□□ -0.13
COL12A1-202ENST00000345356 HCLS1P14317 486 aaPredicted RBP14.25□□□□□ -0.13
COL12A1-202ENST00000345356 DDX58O95786 925 aaKnown RBP14.25□□□□□ -0.13
COL12A1-202ENST00000345356 RARSP54136 660 aaKnown RBP14.25□□□□□ -0.13
COL12A1-202ENST00000345356 DYDC1Q8WWB3 177 aa14.25□□□□□ -0.13
COL12A1-202ENST00000345356 NKTRP30414 1462 aaKnown RBP14.24□□□□□ -0.13
COL12A1-202ENST00000345356 DHX16O60231 1041 aaKnown RBP14.24□□□□□ -0.13
COL12A1-202ENST00000345356 KIF20AO95235 890 aa14.24□□□□□ -0.13
COL12A1-202ENST00000345356 TICAM2Q86XR7 235 aa14.24□□□□□ -0.13
COL12A1-202ENST00000345356 HSP90AB2PQ58FF8 381 aa14.24□□□□□ -0.13
COL12A1-202ENST00000345356 DNAAF4Q8WXU2 420 aa14.24□□□□□ -0.13
COL12A1-202ENST00000345356 NEUROD6Q96NK8 337 aa14.24□□□□□ -0.13
COL12A1-202ENST00000345356 PLEKHH2Q8IVE3 1493 aa14.24□□□□□ -0.13
COL12A1-202ENST00000345356 VGFO15240 615 aaPredicted RBP14.24□□□□□ -0.13
COL12A1-202ENST00000345356 HFM1A2PYH4 1435 aa14.24□□□□□ -0.13
COL12A1-202ENST00000345356 EPB41L2O43491 1005 aaKnown RBP14.23□□□□□ -0.13
COL12A1-202ENST00000345356 SNW1Q13573 536 aaKnown RBP14.23□□□□□ -0.13
COL12A1-202ENST00000345356 CCDC83Q8IWF9 413 aa14.23□□□□□ -0.13
COL12A1-202ENST00000345356 TTC12Q9H892 705 aaPredicted RBP14.23□□□□□ -0.13
COL12A1-202ENST00000345356 ERLIN2O94905 339 aa14.23□□□□□ -0.13
COL12A1-202ENST00000345356 C1orf141Q5JVX7 400 aa14.23□□□□□ -0.13
COL12A1-202ENST00000345356 BLOC1S2Q6QNY1 142 aa14.23□□□□□ -0.13
COL12A1-202ENST00000345356 ANO10Q9NW15 660 aa14.23□□□□□ -0.13
COL12A1-202ENST00000345356 ANKRD50Q9ULJ7 1429 aa14.23□□□□□ -0.13
COL12A1-202ENST00000345356 INCENPQ9NQS7 918 aa14.23□□□□□ -0.13
COL12A1-202ENST00000345356 EPS15P42566 896 aa14.23□□□□□ -0.13
COL12A1-202ENST00000345356 PDIA4P13667 645 aaKnown RBP14.22□□□□□ -0.13
COL12A1-202ENST00000345356 PRIM1P49642 420 aaKnown RBP14.22□□□□□ -0.13
COL12A1-202ENST00000345356 ZRSR2Q15696 482 aaKnown RBP14.22□□□□□ -0.13
COL12A1-202ENST00000345356 MAP9Q49MG5 647 aa14.22□□□□□ -0.13
COL12A1-202ENST00000345356 DUSP27Q5VZP5 1158 aa14.22□□□□□ -0.13
COL12A1-202ENST00000345356 CASTP20810 708 aaKnown RBP14.22□□□□□ -0.13
COL12A1-202ENST00000345356 CCDC148Q8NFR7 591 aa14.22□□□□□ -0.13
COL12A1-202ENST00000345356 KIF4BQ2VIQ3 1234 aa14.22□□□□□ -0.13
COL12A1-202ENST00000345356 RNF187Q5TA31 235 aaPredicted RBP14.22□□□□□ -0.13
COL12A1-202ENST00000345356 SMARCC1Q92922 1105 aaPredicted RBP14.22□□□□□ -0.13
COL12A1-202ENST00000345356 SRCIN1Q9C0H9 1055 aa14.22□□□□□ -0.13
COL12A1-202ENST00000345356 BRMS1Q9HCU9 246 aa14.22□□□□□ -0.13
COL12A1-202ENST00000345356 PRM3Q9NNZ6 103 aa14.22□□□□□ -0.13
COL12A1-202ENST00000345356 SMARCA2P51531 1590 aa14.22□□□□□ -0.13
COL12A1-202ENST00000345356 PLEKHH1Q9ULM0 1364 aa14.22□□□□□ -0.13
COL12A1-202ENST00000345356 CT47A1Q5JQC4 288 aaPredicted RBP14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms