RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 NRXN3Q9Y4C0 1643 aa14.84□□□□□ -0.03
RTN3-203ENST00000341307 SETD1AO15047 1707 aaKnown RBP14.84□□□□□ -0.03
RTN3-203ENST00000341307 PLEKHG1Q9ULL1 1385 aa14.84□□□□□ -0.03
RTN3-203ENST00000341307 ZBTB22O15209 634 aa14.84□□□□□ -0.03
RTN3-203ENST00000341307 PUS7Q96PZ0 661 aaKnown RBP14.84□□□□□ -0.03
RTN3-203ENST00000341307 APAF1O14727 1248 aa14.83□□□□□ -0.04
RTN3-203ENST00000341307 GGNBP2Q9H3C7 697 aa14.83□□□□□ -0.04
RTN3-203ENST00000341307 MTHFSP49914 203 aa14.83□□□□□ -0.04
RTN3-203ENST00000341307 CABP1Q9NZU7 370 aa14.83□□□□□ -0.04
RTN3-203ENST00000341307 SPRYD3Q8NCJ5 442 aa14.82□□□□□ -0.04
RTN3-203ENST00000341307 KCNA6P17658 529 aa14.81□□□□□ -0.04
RTN3-203ENST00000341307 CD163L1Q9NR16 1453 aa14.81□□□□□ -0.04
RTN3-203ENST00000341307 USP32Q8NFA0 1604 aa14.8□□□□□ -0.04
RTN3-203ENST00000341307 POLR3AO14802 1390 aaPredicted RBP14.8□□□□□ -0.04
RTN3-203ENST00000341307 ATAD2Q6PL18 1390 aa14.8□□□□□ -0.04
RTN3-203ENST00000341307 ZNF500O60304 480 aaPredicted RBP14.8□□□□□ -0.04
RTN3-203ENST00000341307 CHRM1P11229 460 aaPredicted RBP14.8□□□□□ -0.04
RTN3-203ENST00000341307 XPCQ01831 940 aaPredicted RBP14.8□□□□□ -0.04
RTN3-203ENST00000341307 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.8□□□□□ -0.04
RTN3-203ENST00000341307 CHMP5Q9NZZ3 219 aa14.8□□□□□ -0.04
RTN3-203ENST00000341307 TBX22Q9Y458 520 aa14.8□□□□□ -0.04
RTN3-203ENST00000341307 PTPRUQ92729 1446 aa14.79□□□□□ -0.04
RTN3-203ENST00000341307 DDX11L8A8MPP1 907 aa14.79□□□□□ -0.04
RTN3-203ENST00000341307 AMOTL2Q9Y2J4 779 aa14.79□□□□□ -0.04
RTN3-203ENST00000341307 TEX2Q8IWB9 1127 aa14.79□□□□□ -0.04
RTN3-203ENST00000341307 SPINK5Q9NQ38 1064 aaPredicted RBP14.79□□□□□ -0.04
RTN3-203ENST00000341307 ABCC11Q96J66 1382 aa14.78□□□□□ -0.04
RTN3-203ENST00000341307 ZNF521Q96K83 1311 aa14.78□□□□□ -0.04
RTN3-203ENST00000341307 CBX1P83916 185 aa14.78□□□□□ -0.04
RTN3-203ENST00000341307 TERF2IPQ9NYB0 399 aa14.78□□□□□ -0.04
RTN3-203ENST00000341307 SHPRHQ149N8 1683 aa14.78□□□□□ -0.04
RTN3-203ENST00000341307 FYB1O15117 783 aa14.77□□□□□ -0.04
RTN3-203ENST00000341307 KCNA4P22459 653 aa14.77□□□□□ -0.04
RTN3-203ENST00000341307 STRCP1A6NGW2 1772 aa14.77□□□□□ -0.04
RTN3-203ENST00000341307 TBC1D32Q96NH3 1257 aa14.77□□□□□ -0.05
RTN3-203ENST00000341307 NEUROD2Q15784 382 aa14.76□□□□□ -0.05
RTN3-203ENST00000341307 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.76□□□□□ -0.05
RTN3-203ENST00000341307 RRP7AQ9Y3A4 280 aaKnown RBP14.76□□□□□ -0.05
RTN3-203ENST00000341307 DLC1Q96QB1 1528 aa14.76□□□□□ -0.05
RTN3-203ENST00000341307 NINLQ9Y2I6 1382 aa14.76□□□□□ -0.05
RTN3-203ENST00000341307 GOLGA2Q08379 1002 aa14.76□□□□□ -0.05
RTN3-203ENST00000341307 TAF3Q5VWG9 929 aa14.76□□□□□ -0.05
RTN3-203ENST00000341307 DUSP27Q5VZP5 1158 aa14.76□□□□□ -0.05
RTN3-203ENST00000341307 SECISBP2LQ93073 1101 aaKnown RBP14.76□□□□□ -0.05
RTN3-203ENST00000341307 FBLN1P23142 703 aa14.75□□□□□ -0.05
RTN3-203ENST00000341307 NOL7Q9UMY1 257 aaKnown RBP14.75□□□□□ -0.05
RTN3-203ENST00000341307 NASPP49321 788 aaPredicted RBP14.75□□□□□ -0.05
RTN3-203ENST00000341307 SASS6Q6UVJ0 657 aa14.75□□□□□ -0.05
RTN3-203ENST00000341307 NCBP3Q53F19 620 aaKnown RBP14.74□□□□□ -0.05
RTN3-203ENST00000341307 HDGFL2Q7Z4V5 671 aaPredicted RBP14.74□□□□□ -0.05
RTN3-203ENST00000341307 PROSER2Q86WR7 435 aaPredicted RBP14.74□□□□□ -0.05
RTN3-203ENST00000341307 ZNF692Q9BU19 519 aaPredicted RBP14.74□□□□□ -0.05
RTN3-203ENST00000341307 NSD2O96028 1365 aa14.74□□□□□ -0.05
RTN3-203ENST00000341307 WASLO00401 505 aaPredicted RBP14.74□□□□□ -0.05
RTN3-203ENST00000341307 ATP2B3Q16720 1220 aa14.74□□□□□ -0.05
RTN3-203ENST00000341307 CGNQ9P2M7 1197 aaKnown RBP14.73□□□□□ -0.05
RTN3-203ENST00000341307 LTBP4Q8N2S1 1624 aa14.73□□□□□ -0.05
RTN3-203ENST00000341307 HS1BP3Q53T59 392 aa14.73□□□□□ -0.05
RTN3-203ENST00000341307 ZNF710Q8N1W2 664 aa14.73□□□□□ -0.05
RTN3-203ENST00000341307 ROBO2Q9HCK4 1378 aa14.73□□□□□ -0.05
RTN3-203ENST00000341307 NUTM2FA1L443 756 aa14.72□□□□□ -0.05
RTN3-203ENST00000341307 SLFN5Q08AF3 891 aa14.72□□□□□ -0.05
RTN3-203ENST00000341307 CERKQ8TCT0 537 aa14.72□□□□□ -0.05
RTN3-203ENST00000341307 CFAP53Q96M91 514 aa14.72□□□□□ -0.05
RTN3-203ENST00000341307 CDK11BP21127 795 aaKnown RBP14.71□□□□□ -0.05
RTN3-203ENST00000341307 BRD2P25440 801 aaKnown RBP14.71□□□□□ -0.05
RTN3-203ENST00000341307 JARID2Q92833 1246 aaPredicted RBP14.71□□□□□ -0.05
RTN3-203ENST00000341307 U2AF1L5P0DN76 240 aaPredicted RBP14.71□□□□□ -0.05
RTN3-203ENST00000341307 U2AF1Q01081 240 aaKnown RBP eCLIP14.71□□□□□ -0.051e-7■■■□□ 14.6
RTN3-203ENST00000341307 DNTTIP2Q5QJE6 756 aaKnown RBP14.71□□□□□ -0.05
RTN3-203ENST00000341307 TMEM94Q12767 1356 aa14.71□□□□□ -0.06
RTN3-203ENST00000341307 PPIP5K1Q6PFW1 1433 aa14.71□□□□□ -0.06
RTN3-203ENST00000341307 IRX5P78411 483 aaPredicted RBP14.7□□□□□ -0.06
RTN3-203ENST00000341307 TCP11L2Q8N4U5 519 aa14.7□□□□□ -0.06
RTN3-203ENST00000341307 NUDT16Q96DE0 195 aaKnown RBP14.7□□□□□ -0.06
RTN3-203ENST00000341307 U2SURPO15042 1029 aaKnown RBP14.69□□□□□ -0.06
RTN3-203ENST00000341307 IGHDP01880 384 aa14.69□□□□□ -0.06
RTN3-203ENST00000341307 CSPP1Q1MSJ5 1256 aa14.69□□□□□ -0.06
RTN3-203ENST00000341307 WWC1Q8IX03 1113 aa14.69□□□□□ -0.06
RTN3-203ENST00000341307 DHX37Q8IY37 1157 aaKnown RBP14.69□□□□□ -0.06
RTN3-203ENST00000341307 RGS22Q8NE09 1264 aa14.69□□□□□ -0.06
RTN3-203ENST00000341307 RUNDC1Q96C34 613 aa14.69□□□□□ -0.06
RTN3-203ENST00000341307 ZRANB1Q9UGI0 708 aa14.69□□□□□ -0.06
RTN3-203ENST00000341307 C14orf37Q86TY3 774 aa14.69□□□□□ -0.06
RTN3-203ENST00000341307 LRRC7Q96NW7 1537 aa14.69□□□□□ -0.06
RTN3-203ENST00000341307 MAPK8IP2Q13387 824 aaPredicted RBP14.68□□□□□ -0.06
RTN3-203ENST00000341307 TECPR2O15040 1411 aa14.68□□□□□ -0.06
RTN3-203ENST00000341307 PRR36Q9H6K5 1346 aa14.68□□□□□ -0.06
RTN3-203ENST00000341307 CPS1P31327 1500 aa14.67□□□□□ -0.06
RTN3-203ENST00000341307 FAM135BQ49AJ0 1406 aa14.67□□□□□ -0.06
RTN3-203ENST00000341307 DDIT3P35638 169 aa14.67□□□□□ -0.06
RTN3-203ENST00000341307 NME9Q86XW9 330 aa14.67□□□□□ -0.06
RTN3-203ENST00000341307 TRMT2AQ8IZ69 625 aaKnown RBP14.67□□□□□ -0.06
RTN3-203ENST00000341307 CHD2O14647 1828 aaKnown RBP14.67□□□□□ -0.06
RTN3-203ENST00000341307 KNDC1Q76NI1 1749 aa14.67□□□□□ -0.06
RTN3-203ENST00000341307 ZKSCAN5Q9Y2L8 839 aa14.67□□□□□ -0.06
RTN3-203ENST00000341307 ATP7BP35670 1465 aa14.67□□□□□ -0.06
RTN3-203ENST00000341307 MAPK8IP3Q9UPT6 1336 aa14.66□□□□□ -0.06
RTN3-203ENST00000341307 ANKRD26Q9UPS8 1709 aa14.66□□□□□ -0.06
RTN3-203ENST00000341307 IGSF3O75054 1194 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms