RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PSME1Q06323 249 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 CCDC83Q8IWF9 413 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 ERICH3Q5RHP9 1530 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 ERICH2A1L162 156 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 GUCY1B3Q02153 619 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 AK7Q96M32 723 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 CT47B1P0C2W7 299 aaPredicted RBP10.33□□□□□ -0.76
RTN3-202ENST00000339997 NOM1Q5C9Z4 860 aaKnown RBP10.33□□□□□ -0.76
RTN3-202ENST00000339997 SSH1Q8WYL5 1049 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 GCC1Q96CN9 775 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 CABP1Q9NZU7 370 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 HOOK1Q9UJC3 728 aaKnown RBP10.33□□□□□ -0.76
RTN3-202ENST00000339997 CYP46A1Q9Y6A2 500 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 GNAI2P04899 355 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 XRCC6P12956 609 aaKnown RBP eCLIP10.33□□□□□ -0.76
RTN3-202ENST00000339997 KCNA4P22459 653 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 SLFN5Q08AF3 891 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 SPATA32Q96LK8 384 aa10.33□□□□□ -0.76
RTN3-202ENST00000339997 TFIP11Q9UBB9 837 aaKnown RBP10.33□□□□□ -0.76
RTN3-202ENST00000339997 ABCA5Q8WWZ7 1642 aa10.32□□□□□ -0.76
RTN3-202ENST00000339997 EVA1CP58658 441 aa10.32□□□□□ -0.76
RTN3-202ENST00000339997 KRT85P78386 507 aa10.32□□□□□ -0.76
RTN3-202ENST00000339997 LEKR1Q6ZMV7 388 aa10.32□□□□□ -0.76
RTN3-202ENST00000339997 IGF1RP08069 1367 aa10.32□□□□□ -0.76
RTN3-202ENST00000339997 WDR33Q9C0J8 1336 aaKnown RBP10.32□□□□□ -0.76
RTN3-202ENST00000339997 SRGAP3O43295 1099 aa10.32□□□□□ -0.76
RTN3-202ENST00000339997 HDGFL1Q5TGJ6 251 aa10.32□□□□□ -0.76
RTN3-202ENST00000339997 PSMA5P28066 241 aa10.32□□□□□ -0.76
RTN3-202ENST00000339997 PDS5BQ9NTI5 1447 aa10.32□□□□□ -0.76
RTN3-202ENST00000339997 GNAI3P08754 354 aa10.32□□□□□ -0.76
RTN3-202ENST00000339997 LRRCC1Q9C099 1032 aa10.32□□□□□ -0.76
RTN3-202ENST00000339997 F6X3S4 739 aa10.31□□□□□ -0.76
RTN3-202ENST00000339997 TAF3Q5VWG9 929 aa10.31□□□□□ -0.76
RTN3-202ENST00000339997 CCDC82Q8N4S0 544 aa10.31□□□□□ -0.76
RTN3-202ENST00000339997 CCDC102AQ96A19 550 aa10.31□□□□□ -0.76
RTN3-202ENST00000339997 RBM42Q9BTD8 480 aaKnown RBP10.31□□□□□ -0.76
RTN3-202ENST00000339997 MYL6BP14649 208 aa10.31□□□□□ -0.76
RTN3-202ENST00000339997 TARBP1Q13395 1621 aaKnown RBP10.31□□□□□ -0.76
RTN3-202ENST00000339997 DTNBO60941 627 aa10.31□□□□□ -0.76
RTN3-202ENST00000339997 CASTP20810 708 aaKnown RBP10.31□□□□□ -0.76
RTN3-202ENST00000339997 HSP90AB4PQ58FF6 505 aa10.31□□□□□ -0.76
RTN3-202ENST00000339997 CT47A1Q5JQC4 288 aaPredicted RBP10.31□□□□□ -0.76
RTN3-202ENST00000339997 PRAM1Q96QH2 718 aa10.31□□□□□ -0.76
RTN3-202ENST00000339997 NUP62CLQ9H1M0 184 aa10.31□□□□□ -0.76
RTN3-202ENST00000339997 LRRFIP2Q9Y608 721 aaKnown RBP10.31□□□□□ -0.76
RTN3-202ENST00000339997 ANKRD50Q9ULJ7 1429 aa10.31□□□□□ -0.76
RTN3-202ENST00000339997 PDCP20941 246 aa10.3□□□□□ -0.76
RTN3-202ENST00000339997 ISM2Q6H9L7 571 aa10.3□□□□□ -0.76
RTN3-202ENST00000339997 ROCK1Q13464 1354 aa10.3□□□□□ -0.76
RTN3-202ENST00000339997 FBLN1P23142 703 aa10.3□□□□□ -0.76
RTN3-202ENST00000339997 DNA2P51530 1060 aa10.3□□□□□ -0.76
RTN3-202ENST00000339997 PPP4R3BQ5MIZ7 849 aa10.3□□□□□ -0.76
RTN3-202ENST00000339997 ZSWIM4Q9H7M6 989 aa10.3□□□□□ -0.76
RTN3-202ENST00000339997 FKBP4Q02790 459 aaKnown RBP eCLIP10.3□□□□□ -0.76
RTN3-202ENST00000339997 ACBD3Q9H3P7 528 aa10.3□□□□□ -0.76
RTN3-202ENST00000339997 CWC22Q9HCG8 908 aaKnown RBP10.3□□□□□ -0.76
RTN3-202ENST00000339997 TXNDC2Q86VQ3 553 aa10.29□□□□□ -0.76
RTN3-202ENST00000339997 CWC15Q9P013 229 aaKnown RBP10.29□□□□□ -0.76
RTN3-202ENST00000339997 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.29□□□□□ -0.76
RTN3-202ENST00000339997 V9GYY5 206 aaPredicted RBP10.29□□□□□ -0.76
RTN3-202ENST00000339997 MCM10Q7L590 875 aa10.29□□□□□ -0.76
RTN3-202ENST00000339997 UBXN4Q92575 508 aa10.29□□□□□ -0.76
RTN3-202ENST00000339997 CCDC47Q96A33 483 aaKnown RBP10.29□□□□□ -0.76
RTN3-202ENST00000339997 RARSP54136 660 aaKnown RBP10.29□□□□□ -0.76
RTN3-202ENST00000339997 NUP133Q8WUM0 1156 aa10.29□□□□□ -0.76
RTN3-202ENST00000339997 BIN1O00499 593 aa10.29□□□□□ -0.76
RTN3-202ENST00000339997 MCM2P49736 904 aa10.29□□□□□ -0.76
RTN3-202ENST00000339997 LRRFIP1Q32MZ4 808 aaKnown RBP10.29□□□□□ -0.76
RTN3-202ENST00000339997 CFAP100Q494V2 611 aa10.29□□□□□ -0.76
RTN3-202ENST00000339997 BLOC1S2Q6QNY1 142 aa10.29□□□□□ -0.76
RTN3-202ENST00000339997 AACSQ86V21 672 aa10.29□□□□□ -0.76
RTN3-202ENST00000339997 PDRG1Q9NUG6 133 aa10.29□□□□□ -0.76
RTN3-202ENST00000339997 GTF2F1P35269 517 aaKnown RBP eCLIP10.28□□□□□ -0.763e-7■■■■■ 29.2
RTN3-202ENST00000339997 MYOM3Q5VTT5 1437 aa10.28□□□□□ -0.76
RTN3-202ENST00000339997 URI1O94763 535 aaPredicted RBP10.28□□□□□ -0.76
RTN3-202ENST00000339997 LETM1O95202 739 aaPredicted RBP10.28□□□□□ -0.76
RTN3-202ENST00000339997 RDXP35241 583 aaKnown RBP10.28□□□□□ -0.76
RTN3-202ENST00000339997 CCDC30Q5VVM6 783 aa10.28□□□□□ -0.76
RTN3-202ENST00000339997 IPO4Q8TEX9 1081 aaKnown RBP10.28□□□□□ -0.76
RTN3-202ENST00000339997 ZHX3Q9H4I2 956 aa10.28□□□□□ -0.76
RTN3-202ENST00000339997 TNNQ9UQP3 1299 aa10.28□□□□□ -0.76
RTN3-202ENST00000339997 MAGI3Q5TCQ9 1506 aa10.28□□□□□ -0.76
RTN3-202ENST00000339997 HCLS1P14317 486 aaPredicted RBP10.28□□□□□ -0.76
RTN3-202ENST00000339997 KLHL10Q6JEL2 608 aa10.28□□□□□ -0.76
RTN3-202ENST00000339997 PRPF40BQ6NWY9 871 aaKnown RBP10.28□□□□□ -0.76
RTN3-202ENST00000339997 RAPGEF4Q8WZA2 1011 aa10.28□□□□□ -0.76
RTN3-202ENST00000339997 KIF21AQ7Z4S6 1674 aa10.28□□□□□ -0.76
RTN3-202ENST00000339997 HSP90AA4PQ58FG1 418 aa10.28□□□□□ -0.76
RTN3-202ENST00000339997 TAX1BP1Q86VP1 789 aa10.28□□□□□ -0.76
RTN3-202ENST00000339997 CPLX3Q8WVH0 158 aa10.28□□□□□ -0.76
RTN3-202ENST00000339997 EPS15P42566 896 aa10.27□□□□□ -0.76
RTN3-202ENST00000339997 CYB5RLQ6IPT4 315 aa10.27□□□□□ -0.76
RTN3-202ENST00000339997 LRRC9Q6ZRR7 1453 aa10.27□□□□□ -0.76
RTN3-202ENST00000339997 SAMD9Q5K651 1589 aa10.27□□□□□ -0.76
RTN3-202ENST00000339997 SEC24BO95487 1268 aa10.27□□□□□ -0.77
RTN3-202ENST00000339997 TCEANC2Q96MN5 208 aa10.27□□□□□ -0.77
RTN3-202ENST00000339997 SPG7Q9UQ90 795 aa10.27□□□□□ -0.77
RTN3-202ENST00000339997 ABTB2Q8N961 1025 aa10.27□□□□□ -0.77
RTN3-202ENST00000339997 AAMPQ13685 434 aa10.27□□□□□ -0.77
RTN3-202ENST00000339997 PTPN14Q15678 1187 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms