RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 CCDC30Q5VVM6 783 aa4.94□□□□□ -1.62
NEDD4-201ENST00000338963 RINLQ6ZS11 566 aa4.94□□□□□ -1.62
NEDD4-201ENST00000338963 TSHZ1Q6ZSZ6 1077 aa4.94□□□□□ -1.62
NEDD4-201ENST00000338963 SRRTQ9BXP5 876 aaKnown RBP4.94□□□□□ -1.62
NEDD4-201ENST00000338963 RRP15Q9Y3B9 282 aaKnown RBP4.94□□□□□ -1.62
NEDD4-201ENST00000338963 NUB1Q9Y5A7 615 aa4.94□□□□□ -1.62
NEDD4-201ENST00000338963 FILIP1LQ4L180 1135 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 EXOC4Q96A65 974 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 LRRFIP2Q9Y608 721 aaKnown RBP4.93□□□□□ -1.62
NEDD4-201ENST00000338963 C11orf91Q3C1V1 193 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 GBP6Q6ZN66 633 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 GAS2L3Q86XJ1 694 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.93□□□□□ -1.62
NEDD4-201ENST00000338963 ELP1O95163 1332 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 NEDD9Q14511 834 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 ZSCAN26Q16670 478 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 RBM26Q5T8P6 1007 aaKnown RBP4.93□□□□□ -1.62
NEDD4-201ENST00000338963 RNF217Q8TC41 542 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 SIRT1Q96EB6 747 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 CCDC97Q96F63 343 aaPredicted RBP4.93□□□□□ -1.62
NEDD4-201ENST00000338963 UACAQ9BZF9 1416 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 CALR3Q96L12 384 aaKnown RBP4.93□□□□□ -1.62
NEDD4-201ENST00000338963 ZBTB12Q9Y330 459 aaPredicted RBP4.93□□□□□ -1.62
NEDD4-201ENST00000338963 GOLGA6L10A6NI86 522 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 C21orf2O43822 256 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 SRPK2P78362 688 aaKnown RBP4.93□□□□□ -1.62
NEDD4-201ENST00000338963 TMED1Q13445 227 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 SRLQ86TD4 932 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 UBA5Q9GZZ9 404 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 INCENPQ9NQS7 918 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 NCOA3Q9Y6Q9 1424 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 ANKRD18AQ8IVF6 992 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 RPUSD2Q8IZ73 545 aaKnown RBP4.93□□□□□ -1.62
NEDD4-201ENST00000338963 MSL3Q8N5Y2 521 aaKnown RBP4.93□□□□□ -1.62
NEDD4-201ENST00000338963 RMDN2Q96LZ7 410 aa4.93□□□□□ -1.62
NEDD4-201ENST00000338963 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.93□□□□□ -1.62
NEDD4-201ENST00000338963 DNAJC21Q5F1R6 531 aaKnown RBP4.92□□□□□ -1.62
NEDD4-201ENST00000338963 C10orf67Q8IYJ2 551 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 FBXO18Q8NFZ0 1043 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 PRDM16Q9HAZ2 1276 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 KIF21BO75037 1637 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 CCDC27Q2M243 656 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 ZNF513Q8N8E2 541 aaPredicted RBP4.92□□□□□ -1.62
NEDD4-201ENST00000338963 POTEB2H3BUK9 544 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 RIOK3O14730 519 aaKnown RBP4.92□□□□□ -1.62
NEDD4-201ENST00000338963 TUBB4BP68371 445 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 SF3B2Q13435 895 aaKnown RBP4.92□□□□□ -1.62
NEDD4-201ENST00000338963 VEZTQ9HBM0 779 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 ETAA1Q9NY74 926 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 CPP00450 1065 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 KRBA2Q6ZNG9 492 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 CCDC50Q8IVM0 306 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 TCP11Q8WWU5 503 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 A1CFQ9NQ94 594 aaKnown RBP4.92□□□□□ -1.62
NEDD4-201ENST00000338963 CLIP2Q9UDT6 1046 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 K7ELQ4 463 aaPredicted RBP4.92□□□□□ -1.62
NEDD4-201ENST00000338963 PRPHP41219 470 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 SPATS2Q86XZ4 545 aaKnown RBP4.92□□□□□ -1.62
NEDD4-201ENST00000338963 SGSM3Q96HU1 749 aa4.92□□□□□ -1.62
NEDD4-201ENST00000338963 MNAT1P51948 309 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 GOLGA2Q08379 1002 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 CDC37Q16543 378 aaPredicted RBP4.91□□□□□ -1.62
NEDD4-201ENST00000338963 DTNBP1Q96EV8 351 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 STK31Q9BXU1 1019 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.91□□□□□ -1.62
NEDD4-201ENST00000338963 ANKRD36BQ8N2N9 1353 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 MCM6Q14566 821 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 CCDC38Q502W7 563 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 EXOC8Q8IYI6 725 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 KIF1BPQ96EK5 621 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 FMN1Q68DA7 1419 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.91□□□□□ -1.62
NEDD4-201ENST00000338963 KLHL23Q8NBE8 558 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 A6NNZ2 444 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 ADCY2Q08462 1091 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 TUBB8Q3ZCM7 444 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 TSPAN18Q96SJ8 248 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 SPINK5Q9NQ38 1064 aaPredicted RBP4.91□□□□□ -1.62
NEDD4-201ENST00000338963 IPO8O15397 1037 aaKnown RBP4.91□□□□□ -1.62
NEDD4-201ENST00000338963 COQ9O75208 318 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 SLU7O95391 586 aaKnown RBP4.91□□□□□ -1.62
NEDD4-201ENST00000338963 GOLGA6L19H0YKK7 550 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 USP19O94966 1318 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 APLFQ8IW19 511 aaPredicted RBP4.91□□□□□ -1.62
NEDD4-201ENST00000338963 RNF214Q8ND24 703 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 TOMM22Q9NS69 142 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 POLKQ9UBT6 870 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 TRAK1Q9UPV9 953 aa4.91□□□□□ -1.62
NEDD4-201ENST00000338963 NCBP1Q09161 790 aaKnown RBP4.9□□□□□ -1.62
NEDD4-201ENST00000338963 CLUAP1Q96AJ1 413 aa4.9□□□□□ -1.62
NEDD4-201ENST00000338963 RBSNQ9H1K0 784 aa4.9□□□□□ -1.62
NEDD4-201ENST00000338963 GNL3LQ9NVN8 582 aaKnown RBP4.9□□□□□ -1.62
NEDD4-201ENST00000338963 POLR3GO15318 223 aaPredicted RBP4.9□□□□□ -1.62
NEDD4-201ENST00000338963 ACTN2P35609 894 aa4.9□□□□□ -1.62
NEDD4-201ENST00000338963 SYT10Q6XYQ8 523 aa4.9□□□□□ -1.62
NEDD4-201ENST00000338963 SOGA1O94964 1423 aa4.9□□□□□ -1.62
NEDD4-201ENST00000338963 KIF7Q2M1P5 1343 aa4.9□□□□□ -1.62
NEDD4-201ENST00000338963 GOLGA6L9A6NEM1 432 aa4.9□□□□□ -1.62
NEDD4-201ENST00000338963 CAVIN2O95810 425 aa4.9□□□□□ -1.62
NEDD4-201ENST00000338963 TUBBP07437 444 aa4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms