RNA–Protein interactions for RNA: ENST00000334490.5

C9orf47-201, Transcript of chromosome 9 open reading frame 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene C9orf47, Length 4,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf47-201ENST00000334490 PTPRKQ15262 1439 aa18.21■□□□□ 0.51
C9orf47-201ENST00000334490 MPHOSPH8Q99549 860 aa18.2■□□□□ 0.5
C9orf47-201ENST00000334490 DUOX2Q9NRD8 1548 aa18.2■□□□□ 0.5
C9orf47-201ENST00000334490 GLIPR1L2Q4G1C9 344 aa18.2■□□□□ 0.5
C9orf47-201ENST00000334490 NINLQ9Y2I6 1382 aa18.2■□□□□ 0.5
C9orf47-201ENST00000334490 CCDC57Q2TAC2 916 aa18.2■□□□□ 0.5
C9orf47-201ENST00000334490 PDZRN3Q9UPQ7 1066 aa18.19■□□□□ 0.5
C9orf47-201ENST00000334490 DUSP27Q5VZP5 1158 aa18.19■□□□□ 0.5
C9orf47-201ENST00000334490 BICDL1Q6ZP65 573 aa18.19■□□□□ 0.5
C9orf47-201ENST00000334490 GCC1Q96CN9 775 aa18.19■□□□□ 0.5
C9orf47-201ENST00000334490 KIAA2012Q0VF49 1180 aa18.19■□□□□ 0.5
C9orf47-201ENST00000334490 CCDC158Q5M9N0 1113 aa18.19■□□□□ 0.5
C9orf47-201ENST00000334490 MPRIPQ6WCQ1 1025 aa18.19■□□□□ 0.5
C9orf47-201ENST00000334490 C22orf23Q9BZE7 217 aa18.19■□□□□ 0.5
C9orf47-201ENST00000334490 ABCC10Q5T3U5 1492 aa18.18■□□□□ 0.5
C9orf47-201ENST00000334490 TAF7Q15545 349 aaPredicted RBP18.18■□□□□ 0.5
C9orf47-201ENST00000334490 GNL3LQ9NVN8 582 aaKnown RBP18.18■□□□□ 0.5
C9orf47-201ENST00000334490 DDX49Q9Y6V7 483 aaKnown RBP18.18■□□□□ 0.5
C9orf47-201ENST00000334490 HSPA2P54652 639 aa18.18■□□□□ 0.5
C9orf47-201ENST00000334490 NUP160Q12769 1436 aa18.17■□□□□ 0.5
C9orf47-201ENST00000334490 PHF14O94880 888 aa18.17■□□□□ 0.5
C9orf47-201ENST00000334490 MSH6P52701 1360 aa18.17■□□□□ 0.5
C9orf47-201ENST00000334490 TCEAL9Q9UHQ7 104 aa18.17■□□□□ 0.5
C9orf47-201ENST00000334490 ABCC2Q92887 1545 aa18.17■□□□□ 0.5
C9orf47-201ENST00000334490 DCAF8L1A6NGE4 600 aa18.17■□□□□ 0.5
C9orf47-201ENST00000334490 SRGAP3O43295 1099 aa18.17■□□□□ 0.5
C9orf47-201ENST00000334490 WDR62O43379 1518 aa18.16■□□□□ 0.5
C9orf47-201ENST00000334490 GOLGA6L3A6NEY3 463 aa18.16■□□□□ 0.5
C9orf47-201ENST00000334490 CHRNA2Q15822 529 aa18.16■□□□□ 0.5
C9orf47-201ENST00000334490 DDX11L8A8MPP1 907 aa18.16■□□□□ 0.5
C9orf47-201ENST00000334490 EXOC5O00471 708 aa18.16■□□□□ 0.5
C9orf47-201ENST00000334490 DEKP35659 375 aaKnown RBP18.16■□□□□ 0.5
C9orf47-201ENST00000334490 MVPQ14764 893 aaKnown RBP18.16■□□□□ 0.5
C9orf47-201ENST00000334490 TTC39AQ5SRH9 613 aa18.16■□□□□ 0.5
C9orf47-201ENST00000334490 SMC3Q9UQE7 1217 aa18.16■□□□□ 0.5
C9orf47-201ENST00000334490 VPS37CA5D8V6 355 aaPredicted RBP18.16■□□□□ 0.5
C9orf47-201ENST00000334490 SLFN5Q08AF3 891 aa18.16■□□□□ 0.5
C9orf47-201ENST00000334490 LRRCC1Q9C099 1032 aa18.15■□□□□ 0.5
C9orf47-201ENST00000334490 MTMR7Q9Y216 660 aa18.15■□□□□ 0.5
C9orf47-201ENST00000334490 CCDC85AQ96PX6 553 aaPredicted RBP18.15■□□□□ 0.5
C9orf47-201ENST00000334490 RIMS2Q9UQ26 1411 aa18.15■□□□□ 0.5
C9orf47-201ENST00000334490 UBAP1LF5GYI3 381 aa18.14■□□□□ 0.49
C9orf47-201ENST00000334490 CEP126Q9P2H0 1117 aa18.14■□□□□ 0.49
C9orf47-201ENST00000334490 DISP3Q9P2K9 1392 aa18.13■□□□□ 0.49
C9orf47-201ENST00000334490 TOM1O60784 492 aa18.13■□□□□ 0.49
C9orf47-201ENST00000334490 PES1O00541 588 aaKnown RBP18.13■□□□□ 0.49
C9orf47-201ENST00000334490 IFT57Q9NWB7 429 aa18.13■□□□□ 0.49
C9orf47-201ENST00000334490 HIP1O00291 1037 aa18.12■□□□□ 0.49
C9orf47-201ENST00000334490 FOSBP53539 338 aa18.12■□□□□ 0.49
C9orf47-201ENST00000334490 CTTNBP2Q8WZ74 1663 aa18.12■□□□□ 0.49
C9orf47-201ENST00000334490 TTC21BQ7Z4L5 1316 aa18.12■□□□□ 0.49
C9orf47-201ENST00000334490 FBLN1P23142 703 aa18.12■□□□□ 0.49
C9orf47-201ENST00000334490 ITSN2Q9NZM3 1697 aa18.12■□□□□ 0.49
C9orf47-201ENST00000334490 PSMA5P28066 241 aa18.12■□□□□ 0.49
C9orf47-201ENST00000334490 SAFBQ15424 915 aaKnown RBP eCLIP18.12■□□□□ 0.49
C9orf47-201ENST00000334490 TPD52L1Q16890 204 aaPredicted RBP18.12■□□□□ 0.49
C9orf47-201ENST00000334490 HMGB2P26583 209 aaKnown RBP18.11■□□□□ 0.49
C9orf47-201ENST00000334490 ZMYM3Q14202 1370 aa18.11■□□□□ 0.49
C9orf47-201ENST00000334490 CWC22Q9HCG8 908 aaKnown RBP18.11■□□□□ 0.49
C9orf47-201ENST00000334490 NPHP3Q7Z494 1330 aa18.11■□□□□ 0.49
C9orf47-201ENST00000334490 ANKRD24Q8TF21 1146 aa18.1■□□□□ 0.49
C9orf47-201ENST00000334490 SART3Q15020 963 aaKnown RBP18.1■□□□□ 0.49
C9orf47-201ENST00000334490 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.1■□□□□ 0.49
C9orf47-201ENST00000334490 NSD2O96028 1365 aa18.1■□□□□ 0.49
C9orf47-201ENST00000334490 LARP1Q6PKG0 1096 aaKnown RBP18.09■□□□□ 0.49
C9orf47-201ENST00000334490 ABCC11Q96J66 1382 aa18.09■□□□□ 0.49
C9orf47-201ENST00000334490 IKQ13123 557 aaPredicted RBP18.09■□□□□ 0.49
C9orf47-201ENST00000334490 RRP12Q5JTH9 1297 aaKnown RBP18.09■□□□□ 0.49
C9orf47-201ENST00000334490 AACSQ86V21 672 aa18.09■□□□□ 0.49
C9orf47-201ENST00000334490 TMEM57Q8N5G2 664 aa18.09■□□□□ 0.49
C9orf47-201ENST00000334490 ZNF652Q9Y2D9 606 aa18.09■□□□□ 0.49
C9orf47-201ENST00000334490 IL1RAPL2Q9NP60 686 aa18.09■□□□□ 0.49
C9orf47-201ENST00000334490 ZPR1O75312 459 aa18.09■□□□□ 0.49
C9orf47-201ENST00000334490 IFNL2Q8IZJ0 200 aa18.09■□□□□ 0.49
C9orf47-201ENST00000334490 BECN2A8MW95 431 aa18.08■□□□□ 0.49
C9orf47-201ENST00000334490 SSH1Q8WYL5 1049 aa18.08■□□□□ 0.49
C9orf47-201ENST00000334490 RPAP2Q8IXW5 612 aaPredicted RBP18.08■□□□□ 0.48
C9orf47-201ENST00000334490 BICD2Q8TD16 824 aa18.08■□□□□ 0.48
C9orf47-201ENST00000334490 CHMP5Q9NZZ3 219 aa18.08■□□□□ 0.48
C9orf47-201ENST00000334490 FKBP4Q02790 459 aaKnown RBP eCLIP18.08■□□□□ 0.48
C9orf47-201ENST00000334490 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.07■□□□□ 0.48
C9orf47-201ENST00000334490 IGHMBP2P38935 993 aaKnown RBP18.07■□□□□ 0.48
C9orf47-201ENST00000334490 HSP90AB2PQ58FF8 381 aa18.07■□□□□ 0.48
C9orf47-201ENST00000334490 NCKAP5LQ9HCH0 1330 aa18.07■□□□□ 0.48
C9orf47-201ENST00000334490 DISP1Q96F81 1524 aa18.07■□□□□ 0.48
C9orf47-201ENST00000334490 SLC3A2P08195 630 aaKnown RBP18.07■□□□□ 0.48
C9orf47-201ENST00000334490 C19orf44Q9H6X5 657 aa18.07■□□□□ 0.48
C9orf47-201ENST00000334490 FMNL2Q96PY5 1086 aa18.06■□□□□ 0.48
C9orf47-201ENST00000334490 NEK4P51957 841 aa18.06■□□□□ 0.48
C9orf47-201ENST00000334490 GOLGA6L19H0YKK7 550 aa18.06■□□□□ 0.48
C9orf47-201ENST00000334490 TTC21AQ8NDW8 1320 aa18.06■□□□□ 0.48
C9orf47-201ENST00000334490 SKOR2Q2VWA4 1001 aaPredicted RBP18.05■□□□□ 0.48
C9orf47-201ENST00000334490 MYD88Q99836 296 aa18.05■□□□□ 0.48
C9orf47-201ENST00000334490 MAP4K4O95819 1239 aaPredicted RBP18.05■□□□□ 0.48
C9orf47-201ENST00000334490 NUCB2P80303 420 aa18.05■□□□□ 0.48
C9orf47-201ENST00000334490 KCNA6P17658 529 aa18.04■□□□□ 0.48
C9orf47-201ENST00000334490 EXOC6BQ9Y2D4 811 aa18.04■□□□□ 0.48
C9orf47-201ENST00000334490 DBF4Q9UBU7 674 aaPredicted RBP18.04■□□□□ 0.48
C9orf47-201ENST00000334490 ANKRD36BQ8N2N9 1353 aa18.04■□□□□ 0.48
C9orf47-201ENST00000334490 KDM4AO75164 1064 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms