RNA–Protein interactions for RNA: ENST00000308177.4

PCDHGC3-201, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGC3, Length 4,725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-201ENST00000308177 BTBD11A6QL63 1104 aa13.9□□□□□ -0.18
PCDHGC3-201ENST00000308177 IL16Q14005 1332 aa13.9□□□□□ -0.18
PCDHGC3-201ENST00000308177 PRDM11Q9NQV5 511 aa13.9□□□□□ -0.18
PCDHGC3-201ENST00000308177 TTC21BQ7Z4L5 1316 aa13.9□□□□□ -0.18
PCDHGC3-201ENST00000308177 CDK11BP21127 795 aaKnown RBP13.9□□□□□ -0.18
PCDHGC3-201ENST00000308177 NUCB2P80303 420 aa13.9□□□□□ -0.18
PCDHGC3-201ENST00000308177 TOM1L2Q6ZVM7 507 aa13.9□□□□□ -0.18
PCDHGC3-201ENST00000308177 CNTROBQ8N137 903 aa13.9□□□□□ -0.18
PCDHGC3-201ENST00000308177 NEUROD6Q96NK8 337 aa13.89□□□□□ -0.19
PCDHGC3-201ENST00000308177 LRRCC1Q9C099 1032 aa13.89□□□□□ -0.19
PCDHGC3-201ENST00000308177 ISY1Q9ULR0 285 aaKnown RBP13.89□□□□□ -0.19
PCDHGC3-201ENST00000308177 PHF14O94880 888 aa13.89□□□□□ -0.19
PCDHGC3-201ENST00000308177 FAM184AQ8NB25 1140 aa13.89□□□□□ -0.19
PCDHGC3-201ENST00000308177 H3BQV1 296 aa13.88□□□□□ -0.19
PCDHGC3-201ENST00000308177 CABP4P57796 275 aa13.88□□□□□ -0.19
PCDHGC3-201ENST00000308177 IFFO2Q5TF58 517 aa13.88□□□□□ -0.19
PCDHGC3-201ENST00000308177 CHMP4CQ96CF2 233 aa13.88□□□□□ -0.19
PCDHGC3-201ENST00000308177 USHBP1Q8N6Y0 703 aa13.88□□□□□ -0.19
PCDHGC3-201ENST00000308177 TAF7Q15545 349 aaPredicted RBP13.88□□□□□ -0.19
PCDHGC3-201ENST00000308177 CCDC27Q2M243 656 aa13.88□□□□□ -0.19
PCDHGC3-201ENST00000308177 TMX4Q9H1E5 349 aaPredicted RBP13.88□□□□□ -0.19
PCDHGC3-201ENST00000308177 PPIP5K1Q6PFW1 1433 aa13.87□□□□□ -0.19
PCDHGC3-201ENST00000308177 ERC1Q8IUD2 1116 aa13.87□□□□□ -0.19
PCDHGC3-201ENST00000308177 NPC1L1Q9UHC9 1359 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 PLEKHH1Q9ULM0 1364 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 RABEP1Q15276 862 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 POLKQ9UBT6 870 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 FAM83GA6ND36 823 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 SAMD9LQ8IVG5 1584 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 ZMYM3Q14202 1370 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 KIAA2012Q0VF49 1180 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 HSP90AB2PQ58FF8 381 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 MYO5CQ9NQX4 1742 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 A0A1W2PP64 1363 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 SRGAP3O43295 1099 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 DDX54Q8TDD1 881 aaKnown RBP13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 MBIPQ9NS73 344 aa13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 YTHDC2Q9H6S0 1430 aaKnown RBP13.86□□□□□ -0.19
PCDHGC3-201ENST00000308177 NEK4P51957 841 aa13.85□□□□□ -0.19
PCDHGC3-201ENST00000308177 FSD1Q9BTV5 496 aa13.85□□□□□ -0.19
PCDHGC3-201ENST00000308177 SF3A1Q15459 793 aaKnown RBP13.85□□□□□ -0.19
PCDHGC3-201ENST00000308177 MYL6BP14649 208 aa13.85□□□□□ -0.19
PCDHGC3-201ENST00000308177 CHAF1AQ13111 956 aaPredicted RBP13.85□□□□□ -0.19
PCDHGC3-201ENST00000308177 SMC3Q9UQE7 1217 aa13.85□□□□□ -0.19
PCDHGC3-201ENST00000308177 AMOTQ4VCS5 1084 aa13.84□□□□□ -0.19
PCDHGC3-201ENST00000308177 RBM42Q9BTD8 480 aaKnown RBP13.84□□□□□ -0.19
PCDHGC3-201ENST00000308177 ZRANB1Q9UGI0 708 aa13.84□□□□□ -0.19
PCDHGC3-201ENST00000308177 APPP05067 770 aa13.84□□□□□ -0.19
PCDHGC3-201ENST00000308177 TTC21AQ8NDW8 1320 aa13.84□□□□□ -0.19
PCDHGC3-201ENST00000308177 EXOC6BQ9Y2D4 811 aa13.83□□□□□ -0.2
PCDHGC3-201ENST00000308177 ATP10AO60312 1499 aa13.83□□□□□ -0.2
PCDHGC3-201ENST00000308177 IGHDP01880 384 aa13.83□□□□□ -0.2
PCDHGC3-201ENST00000308177 NEO1Q92859 1461 aa13.82□□□□□ -0.2
PCDHGC3-201ENST00000308177 F6X3S4 739 aa13.82□□□□□ -0.2
PCDHGC3-201ENST00000308177 CPLX2Q6PUV4 134 aaKnown RBP13.82□□□□□ -0.2
PCDHGC3-201ENST00000308177 IL1RAPL2Q9NP60 686 aa13.82□□□□□ -0.2
PCDHGC3-201ENST00000308177 NPATQ14207 1427 aa13.82□□□□□ -0.2
PCDHGC3-201ENST00000308177 MCTP1Q6DN14 999 aa13.82□□□□□ -0.2
PCDHGC3-201ENST00000308177 TTC37Q6PGP7 1564 aa13.81□□□□□ -0.2
PCDHGC3-201ENST00000308177 VPS37CA5D8V6 355 aaPredicted RBP13.81□□□□□ -0.2
PCDHGC3-201ENST00000308177 MCM2P49736 904 aa13.81□□□□□ -0.2
PCDHGC3-201ENST00000308177 CCDC34Q96HJ3 373 aa13.81□□□□□ -0.2
PCDHGC3-201ENST00000308177 TRDNQ13061 729 aa13.81□□□□□ -0.2
PCDHGC3-201ENST00000308177 MPRIPQ6WCQ1 1025 aa13.81□□□□□ -0.2
PCDHGC3-201ENST00000308177 SIL1Q9H173 461 aa13.81□□□□□ -0.2
PCDHGC3-201ENST00000308177 ABCC1P33527 1531 aa13.81□□□□□ -0.2
PCDHGC3-201ENST00000308177 KIF6Q6ZMV9 814 aa13.81□□□□□ -0.2
PCDHGC3-201ENST00000308177 HIP1O00291 1037 aa13.81□□□□□ -0.2
PCDHGC3-201ENST00000308177 G3V3G9 751 aa13.8□□□□□ -0.2
PCDHGC3-201ENST00000308177 WASHC4Q2M389 1173 aa13.8□□□□□ -0.2
PCDHGC3-201ENST00000308177 DCAF8Q5TAQ9 597 aa13.8□□□□□ -0.2
PCDHGC3-201ENST00000308177 PTPRCP08575 1304 aa13.8□□□□□ -0.2
PCDHGC3-201ENST00000308177 CPLX1O14810 134 aa13.8□□□□□ -0.2
PCDHGC3-201ENST00000308177 SYNE3Q6ZMZ3 975 aa13.8□□□□□ -0.2
PCDHGC3-201ENST00000308177 KRT28Q7Z3Y7 464 aa13.8□□□□□ -0.2
PCDHGC3-201ENST00000308177 CFAP65Q6ZU64 1925 aaKnown RBP13.8□□□□□ -0.2
PCDHGC3-201ENST00000308177 VPS37DQ86XT2 251 aa13.8□□□□□ -0.2
PCDHGC3-201ENST00000308177 AEBP1Q8IUX7 1158 aa13.8□□□□□ -0.2
PCDHGC3-201ENST00000308177 TULP1O00294 542 aaPredicted RBP13.79□□□□□ -0.2
PCDHGC3-201ENST00000308177 PSMA5P28066 241 aa13.79□□□□□ -0.2
PCDHGC3-201ENST00000308177 EIF4A2Q14240 407 aaKnown RBP13.79□□□□□ -0.2
PCDHGC3-201ENST00000308177 DNAJC2Q99543 621 aaKnown RBP13.79□□□□□ -0.2
PCDHGC3-201ENST00000308177 FLIIQ13045 1269 aa13.79□□□□□ -0.2
PCDHGC3-201ENST00000308177 ARHGAP45Q92619 1136 aa13.79□□□□□ -0.2
PCDHGC3-201ENST00000308177 NCKAP5LQ9HCH0 1330 aa13.79□□□□□ -0.2
PCDHGC3-201ENST00000308177 PCDHB15Q9Y5E8 787 aa13.79□□□□□ -0.2
PCDHGC3-201ENST00000308177 SPINK5Q9NQ38 1064 aaPredicted RBP13.78□□□□□ -0.2
PCDHGC3-201ENST00000308177 PREX2Q70Z35 1606 aa13.78□□□□□ -0.2
PCDHGC3-201ENST00000308177 MSH5O43196 834 aa13.78□□□□□ -0.2
PCDHGC3-201ENST00000308177 TPM4P67936 248 aa13.78□□□□□ -0.2
PCDHGC3-201ENST00000308177 CHD1O14646 1710 aa13.78□□□□□ -0.2
PCDHGC3-201ENST00000308177 K7ELQ4 463 aaPredicted RBP13.78□□□□□ -0.2
PCDHGC3-201ENST00000308177 SMARCA5O60264 1052 aaPredicted RBP13.78□□□□□ -0.2
PCDHGC3-201ENST00000308177 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.78□□□□□ -0.2
PCDHGC3-201ENST00000308177 PTPRTO14522 1441 aa13.77□□□□□ -0.2
PCDHGC3-201ENST00000308177 TRAK2O60296 914 aa13.77□□□□□ -0.21
PCDHGC3-201ENST00000308177 MAP4K4O95819 1239 aaPredicted RBP13.77□□□□□ -0.21
PCDHGC3-201ENST00000308177 AACSQ86V21 672 aa13.77□□□□□ -0.21
PCDHGC3-201ENST00000308177 ZFYVE9O95405 1425 aa13.77□□□□□ -0.21
PCDHGC3-201ENST00000308177 AKAP17AQ02040 695 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms