RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 EDC4Q6P2E9 1401 aaKnown RBP13.7□□□□□ -0.22
LSM3-201ENST00000306024 ZC3H6P61129 1189 aaKnown RBP13.69□□□□□ -0.22
LSM3-201ENST00000306024 FAM13BQ9NYF5 915 aa13.69□□□□□ -0.22
LSM3-201ENST00000306024 PTCH1Q13635 1447 aa13.69□□□□□ -0.22
LSM3-201ENST00000306024 RUNDC1Q96C34 613 aa13.69□□□□□ -0.22
LSM3-201ENST00000306024 ESPNB1AK53 854 aa13.69□□□□□ -0.22
LSM3-201ENST00000306024 NPHP3Q7Z494 1330 aa13.68□□□□□ -0.22
LSM3-201ENST00000306024 TPM2P07951 284 aa13.68□□□□□ -0.22
LSM3-201ENST00000306024 DDX17Q92841 729 aaKnown RBP13.68□□□□□ -0.22
LSM3-201ENST00000306024 ARHGEF28Q8N1W1 1705 aaKnown RBP13.68□□□□□ -0.22
LSM3-201ENST00000306024 GOLGA2Q08379 1002 aa13.68□□□□□ -0.22
LSM3-201ENST00000306024 MRE11P49959 708 aa13.67□□□□□ -0.22
LSM3-201ENST00000306024 RBM10P98175 930 aaKnown RBP13.67□□□□□ -0.22
LSM3-201ENST00000306024 TCP11L2Q8N4U5 519 aa13.67□□□□□ -0.22
LSM3-201ENST00000306024 PANK2Q9BZ23 570 aa13.67□□□□□ -0.22
LSM3-201ENST00000306024 POLKQ9UBT6 870 aa13.67□□□□□ -0.22
LSM3-201ENST00000306024 PRKAR2BP31323 418 aa13.66□□□□□ -0.22
LSM3-201ENST00000306024 KCNH5Q8NCM2 988 aa13.66□□□□□ -0.22
LSM3-201ENST00000306024 SLAIN2Q9P270 581 aa13.66□□□□□ -0.22
LSM3-201ENST00000306024 ADGRL3Q9HAR2 1447 aa13.66□□□□□ -0.22
LSM3-201ENST00000306024 XRCC6P12956 609 aaKnown RBP eCLIP13.66□□□□□ -0.22
LSM3-201ENST00000306024 ATP7BP35670 1465 aa13.66□□□□□ -0.22
LSM3-201ENST00000306024 RTF1Q92541 710 aaKnown RBP13.66□□□□□ -0.22
LSM3-201ENST00000306024 SULT6B1Q6IMI4 303 aa13.65□□□□□ -0.22
LSM3-201ENST00000306024 PDCL3Q9H2J4 239 aa13.65□□□□□ -0.22
LSM3-201ENST00000306024 DIP2AQ14689 1571 aa13.65□□□□□ -0.22
LSM3-201ENST00000306024 LMTK3Q96Q04 1460 aa13.65□□□□□ -0.22
LSM3-201ENST00000306024 A0A0G2JS52 829 aa13.64□□□□□ -0.23
LSM3-201ENST00000306024 RIPK4P57078 832 aa13.64□□□□□ -0.23
LSM3-201ENST00000306024 HSP90AB2PQ58FF8 381 aa13.64□□□□□ -0.23
LSM3-201ENST00000306024 POLR1AO95602 1720 aaPredicted RBP13.63□□□□□ -0.23
LSM3-201ENST00000306024 KIAA1211Q6ZU35 1233 aa13.63□□□□□ -0.23
LSM3-201ENST00000306024 NLRP2Q9NX02 1062 aa13.63□□□□□ -0.23
LSM3-201ENST00000306024 MED14O60244 1454 aa13.63□□□□□ -0.23
LSM3-201ENST00000306024 TRAK2O60296 914 aa13.63□□□□□ -0.23
LSM3-201ENST00000306024 EVA1CP58658 441 aa13.63□□□□□ -0.23
LSM3-201ENST00000306024 PRDM11Q9NQV5 511 aa13.63□□□□□ -0.23
LSM3-201ENST00000306024 USP6P35125 1406 aa13.62□□□□□ -0.23
LSM3-201ENST00000306024 CABLES1Q8TDN4 633 aa13.62□□□□□ -0.23
LSM3-201ENST00000306024 POLR3AO14802 1390 aaPredicted RBP13.62□□□□□ -0.23
LSM3-201ENST00000306024 UBAP1LF5GYI3 381 aa13.62□□□□□ -0.23
LSM3-201ENST00000306024 ANKARQ7Z5J8 1434 aa13.61□□□□□ -0.23
LSM3-201ENST00000306024 CPS1P31327 1500 aa13.61□□□□□ -0.23
LSM3-201ENST00000306024 TOM1O60784 492 aa13.61□□□□□ -0.23
LSM3-201ENST00000306024 C20orf194Q5TEA3 1177 aa13.61□□□□□ -0.23
LSM3-201ENST00000306024 NCLP19338 710 aaKnown RBP13.61□□□□□ -0.23
LSM3-201ENST00000306024 MAP3K19Q56UN5 1328 aa13.61□□□□□ -0.23
LSM3-201ENST00000306024 NRXN3Q9Y4C0 1643 aa13.61□□□□□ -0.23
LSM3-201ENST00000306024 FCHSD2O94868 740 aa13.6□□□□□ -0.23
LSM3-201ENST00000306024 HSCBQ8IWL3 235 aa13.6□□□□□ -0.23
LSM3-201ENST00000306024 NGEFQ8N5V2 710 aa13.6□□□□□ -0.23
LSM3-201ENST00000306024 GCP02774 474 aa13.6□□□□□ -0.23
LSM3-201ENST00000306024 LMOD3Q0VAK6 560 aa13.6□□□□□ -0.23
LSM3-201ENST00000306024 GRPEL1Q9HAV7 217 aa13.6□□□□□ -0.23
LSM3-201ENST00000306024 CCDC9Q9Y3X0 531 aaKnown RBP13.6□□□□□ -0.23
LSM3-201ENST00000306024 GOLGA6L22H0YM25 854 aa13.59□□□□□ -0.23
LSM3-201ENST00000306024 C8orf34Q49A92 452 aa13.59□□□□□ -0.23
LSM3-201ENST00000306024 MCM4P33991 863 aa13.59□□□□□ -0.23
LSM3-201ENST00000306024 CALD1Q05682 793 aaKnown RBP13.59□□□□□ -0.23
LSM3-201ENST00000306024 NUTM2BA6NNL0 878 aaPredicted RBP13.58□□□□□ -0.23
LSM3-201ENST00000306024 NUTM2EB1AL46 878 aaPredicted RBP13.58□□□□□ -0.23
LSM3-201ENST00000306024 NUTM2AQ8IVF1 878 aaPredicted RBP13.58□□□□□ -0.23
LSM3-201ENST00000306024 CHRNA2Q15822 529 aa13.58□□□□□ -0.24
LSM3-201ENST00000306024 DNTTIP2Q5QJE6 756 aaKnown RBP13.58□□□□□ -0.24
LSM3-201ENST00000306024 STRN4Q9NRL3 753 aa13.58□□□□□ -0.24
LSM3-201ENST00000306024 DDX11L8A8MPP1 907 aa13.58□□□□□ -0.24
LSM3-201ENST00000306024 E9PSI1 815 aa13.57□□□□□ -0.24
LSM3-201ENST00000306024 USHBP1Q8N6Y0 703 aa13.57□□□□□ -0.24
LSM3-201ENST00000306024 R3HCC1Q9Y3T6 440 aaKnown RBP13.57□□□□□ -0.24
LSM3-201ENST00000306024 CPSF1Q10570 1443 aaKnown RBP13.57□□□□□ -0.24
LSM3-201ENST00000306024 CHMP5Q9NZZ3 219 aa13.57□□□□□ -0.24
LSM3-201ENST00000306024 EIF4A2Q14240 407 aaKnown RBP13.57□□□□□ -0.24
LSM3-201ENST00000306024 RAPGEF4Q8WZA2 1011 aa13.57□□□□□ -0.24
LSM3-201ENST00000306024 HSP90AB1P08238 724 aaKnown RBP13.56□□□□□ -0.24
LSM3-201ENST00000306024 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.56□□□□□ -0.24
LSM3-201ENST00000306024 MAP7D2Q96T17 732 aa13.56□□□□□ -0.24
LSM3-201ENST00000306024 TMPOP42166 694 aaKnown RBP13.55□□□□□ -0.24
LSM3-201ENST00000306024 FLT4P35916 1363 aa13.55□□□□□ -0.24
LSM3-201ENST00000306024 BRINP3Q76B58 766 aa13.55□□□□□ -0.24
LSM3-201ENST00000306024 GBP4Q96PP9 640 aa13.55□□□□□ -0.24
LSM3-201ENST00000306024 NKTRP30414 1462 aaKnown RBP13.55□□□□□ -0.24
LSM3-201ENST00000306024 MFAP1P55081 439 aaKnown RBP13.54□□□□□ -0.24
LSM3-201ENST00000306024 C1orf141Q5JVX7 400 aa13.54□□□□□ -0.24
LSM3-201ENST00000306024 AEBP1Q8IUX7 1158 aa13.54□□□□□ -0.24
LSM3-201ENST00000306024 C1orf167Q5SNV9 1468 aa13.54□□□□□ -0.24
LSM3-201ENST00000306024 TOM1L2Q6ZVM7 507 aa13.54□□□□□ -0.24
LSM3-201ENST00000306024 ELL2O00472 640 aaPredicted RBP13.53□□□□□ -0.24
LSM3-201ENST00000306024 PTMAP06454 111 aaKnown RBP13.53□□□□□ -0.24
LSM3-201ENST00000306024 ZNF142P52746 1687 aaPredicted RBP13.53□□□□□ -0.24
LSM3-201ENST00000306024 ADAMTS2O95450 1211 aa13.53□□□□□ -0.24
LSM3-201ENST00000306024 HOXC9P31274 260 aa13.53□□□□□ -0.24
LSM3-201ENST00000306024 WWC1Q8IX03 1113 aa13.53□□□□□ -0.24
LSM3-201ENST00000306024 ZHX1Q9UKY1 873 aaPredicted RBP13.53□□□□□ -0.24
LSM3-201ENST00000306024 NFE2L2Q16236 605 aa13.52□□□□□ -0.24
LSM3-201ENST00000306024 PRDM10Q9NQV6 1147 aa13.52□□□□□ -0.24
LSM3-201ENST00000306024 CDC42BPGQ6DT37 1551 aa13.52□□□□□ -0.24
LSM3-201ENST00000306024 PDE4CQ08493 712 aa13.52□□□□□ -0.25
LSM3-201ENST00000306024 GAS2L2Q8NHY3 880 aa13.52□□□□□ -0.25
LSM3-201ENST00000306024 ANKRD24Q8TF21 1146 aa13.52□□□□□ -0.25
LSM3-201ENST00000306024 LRRC59Q96AG4 307 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms