RNA–Protein interactions for RNA: ENST00000304060.9

ZNF440-201, Transcript of zinc finger protein 440, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF440, Length 4,189 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF440-201ENST00000304060 NSD3Q9BZ95 1437 aa8.22□□□□□ -1.09
ZNF440-201ENST00000304060 CLTCL1P53675 1640 aa8.22□□□□□ -1.09
ZNF440-201ENST00000304060 SOX12O15370 315 aa8.22□□□□□ -1.09
ZNF440-201ENST00000304060 HSPA6P17066 643 aa8.22□□□□□ -1.09
ZNF440-201ENST00000304060 PLEKHH1Q9ULM0 1364 aa8.22□□□□□ -1.09
ZNF440-201ENST00000304060 SMARCC1Q92922 1105 aaPredicted RBP8.21□□□□□ -1.09
ZNF440-201ENST00000304060 MARF1Q9Y4F3 1742 aaKnown RBP8.21□□□□□ -1.09
ZNF440-201ENST00000304060 CPDO75976 1380 aa8.21□□□□□ -1.09
ZNF440-201ENST00000304060 PLEKHG3A1L390 1219 aa8.21□□□□□ -1.09
ZNF440-201ENST00000304060 IL2RBP14784 551 aa8.21□□□□□ -1.09
ZNF440-201ENST00000304060 TTC21AQ8NDW8 1320 aa8.21□□□□□ -1.1
ZNF440-201ENST00000304060 WDR17Q8IZU2 1322 aa8.21□□□□□ -1.1
ZNF440-201ENST00000304060 CENPJQ9HC77 1338 aaPredicted RBP8.21□□□□□ -1.1
ZNF440-201ENST00000304060 TERF2IPQ9NYB0 399 aa8.2□□□□□ -1.1
ZNF440-201ENST00000304060 POLR3AO14802 1390 aaPredicted RBP8.2□□□□□ -1.1
ZNF440-201ENST00000304060 NPM2Q86SE8 214 aaKnown RBP8.2□□□□□ -1.1
ZNF440-201ENST00000304060 TULP4Q9NRJ4 1543 aa8.2□□□□□ -1.1
ZNF440-201ENST00000304060 NPM3O75607 178 aaKnown RBP8.2□□□□□ -1.1
ZNF440-201ENST00000304060 RAPGEF4Q8WZA2 1011 aa8.19□□□□□ -1.1
ZNF440-201ENST00000304060 AK7Q96M32 723 aa8.19□□□□□ -1.1
ZNF440-201ENST00000304060 NRXN3Q9Y4C0 1643 aa8.19□□□□□ -1.1
ZNF440-201ENST00000304060 MAP3K5Q99683 1374 aa8.18□□□□□ -1.1
ZNF440-201ENST00000304060 CD2APQ9Y5K6 639 aa8.18□□□□□ -1.1
ZNF440-201ENST00000304060 FMN2Q9NZ56 1722 aa8.18□□□□□ -1.1
ZNF440-201ENST00000304060 WASHC2AQ641Q2 1341 aa8.18□□□□□ -1.1
ZNF440-201ENST00000304060 AMPHP49418 695 aa8.18□□□□□ -1.1
ZNF440-201ENST00000304060 TNS4Q8IZW8 715 aa8.18□□□□□ -1.1
ZNF440-201ENST00000304060 KDM2BQ8NHM5 1336 aa8.17□□□□□ -1.1
ZNF440-201ENST00000304060 AIDAQ96BJ3 306 aa8.17□□□□□ -1.1
ZNF440-201ENST00000304060 DDX54Q8TDD1 881 aaKnown RBP8.17□□□□□ -1.1
ZNF440-201ENST00000304060 ACSBG1Q96GR2 724 aa8.17□□□□□ -1.1
ZNF440-201ENST00000304060 CCNL1Q9UK58 526 aaPredicted RBP8.17□□□□□ -1.1
ZNF440-201ENST00000304060 TMC1Q8TDI8 760 aa8.17□□□□□ -1.1
ZNF440-201ENST00000304060 USP47Q96K76 1375 aa8.16□□□□□ -1.1
ZNF440-201ENST00000304060 ZNF526Q8TF50 670 aaPredicted RBP8.16□□□□□ -1.1
ZNF440-201ENST00000304060 PLCH1Q4KWH8 1693 aa8.16□□□□□ -1.1
ZNF440-201ENST00000304060 TATP17735 454 aaPredicted RBP8.16□□□□□ -1.1
ZNF440-201ENST00000304060 PCGF6Q9BYE7 350 aa8.16□□□□□ -1.1
ZNF440-201ENST00000304060 SMG6Q86US8 1419 aaKnown RBP8.15□□□□□ -1.1
ZNF440-201ENST00000304060 CENPBP07199 599 aaPredicted RBP8.14□□□□□ -1.11
ZNF440-201ENST00000304060 USP19O94966 1318 aa8.14□□□□□ -1.11
ZNF440-201ENST00000304060 FKBP8Q14318 412 aa8.14□□□□□ -1.11
ZNF440-201ENST00000304060 CCDC87Q9NVE4 849 aa8.14□□□□□ -1.11
ZNF440-201ENST00000304060 KNDC1Q76NI1 1749 aa8.14□□□□□ -1.11
ZNF440-201ENST00000304060 CAPN15O75808 1086 aa8.14□□□□□ -1.11
ZNF440-201ENST00000304060 USP6P35125 1406 aa8.13□□□□□ -1.11
ZNF440-201ENST00000304060 TOMM70O94826 608 aa8.13□□□□□ -1.11
ZNF440-201ENST00000304060 PPIP5K1Q6PFW1 1433 aa8.13□□□□□ -1.11
ZNF440-201ENST00000304060 SPATA31E1Q6ZUB1 1445 aa8.13□□□□□ -1.11
ZNF440-201ENST00000304060 COG3Q96JB2 828 aa8.13□□□□□ -1.11
ZNF440-201ENST00000304060 CGNL1Q0VF96 1302 aa8.13□□□□□ -1.11
ZNF440-201ENST00000304060 ANO8Q9HCE9 1232 aaPredicted RBP8.13□□□□□ -1.11
ZNF440-201ENST00000304060 CABP1Q9NZU7 370 aa8.13□□□□□ -1.11
ZNF440-201ENST00000304060 BRWD3Q6RI45 1802 aa8.12□□□□□ -1.11
ZNF440-201ENST00000304060 CDCA8Q53HL2 280 aa8.12□□□□□ -1.11
ZNF440-201ENST00000304060 MARCH10Q8NA82 808 aaPredicted RBP8.12□□□□□ -1.11
ZNF440-201ENST00000304060 KAT6BQ8WYB5 2073 aa8.12□□□□□ -1.11
ZNF440-201ENST00000304060 PLCB2Q00722 1185 aa8.12□□□□□ -1.11
ZNF440-201ENST00000304060 LTV1Q96GA3 475 aaPredicted RBP8.12□□□□□ -1.11
ZNF440-201ENST00000304060 PRR36Q9H6K5 1346 aa8.12□□□□□ -1.11
ZNF440-201ENST00000304060 CABP2Q9NPB3 220 aa8.12□□□□□ -1.11
ZNF440-201ENST00000304060 PPLO60437 1756 aa8.12□□□□□ -1.11
ZNF440-201ENST00000304060 ATP10DQ9P241 1426 aa8.12□□□□□ -1.11
ZNF440-201ENST00000304060 ZCRB1Q8TBF4 217 aaKnown RBP8.11□□□□□ -1.11
ZNF440-201ENST00000304060 BEGAINQ9BUH8 593 aa8.11□□□□□ -1.11
ZNF440-201ENST00000304060 ARHGAP27Q6ZUM4 889 aa8.11□□□□□ -1.11
ZNF440-201ENST00000304060 ANKRD24Q8TF21 1146 aa8.11□□□□□ -1.11
ZNF440-201ENST00000304060 NPHP1O15259 732 aa8.11□□□□□ -1.11
ZNF440-201ENST00000304060 PTGER2P43116 358 aa8.11□□□□□ -1.11
ZNF440-201ENST00000304060 KTN1Q86UP2 1357 aaKnown RBP8.11□□□□□ -1.11
ZNF440-201ENST00000304060 BCL9O00512 1426 aa8.11□□□□□ -1.11
ZNF440-201ENST00000304060 ITSN1Q15811 1721 aa8.11□□□□□ -1.11
ZNF440-201ENST00000304060 FSTL1Q12841 308 aa8.11□□□□□ -1.11
ZNF440-201ENST00000304060 ARHGEF25Q86VW2 580 aa8.11□□□□□ -1.11
ZNF440-201ENST00000304060 PARP3Q9Y6F1 533 aa8.11□□□□□ -1.11
ZNF440-201ENST00000304060 TTC21BQ7Z4L5 1316 aa8.1□□□□□ -1.11
ZNF440-201ENST00000304060 NRKQ7Z2Y5 1582 aa8.1□□□□□ -1.11
ZNF440-201ENST00000304060 SPG7Q9UQ90 795 aa8.1□□□□□ -1.11
ZNF440-201ENST00000304060 COL5A2P05997 1499 aaPredicted RBP8.09□□□□□ -1.11
ZNF440-201ENST00000304060 PLEKHG2Q9H7P9 1386 aa8.09□□□□□ -1.11
ZNF440-201ENST00000304060 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.09□□□□□ -1.11
ZNF440-201ENST00000304060 NLGN1Q8N2Q7 840 aa8.09□□□□□ -1.11
ZNF440-201ENST00000304060 RBM46Q8TBY0 533 aaKnown RBP8.09□□□□□ -1.11
ZNF440-201ENST00000304060 BCS1LQ9Y276 419 aa8.09□□□□□ -1.11
ZNF440-201ENST00000304060 FCHSD2O94868 740 aa8.09□□□□□ -1.11
ZNF440-201ENST00000304060 SMC1BQ8NDV3 1235 aa8.09□□□□□ -1.11
ZNF440-201ENST00000304060 DPY19L2Q6NUT2 758 aa8.09□□□□□ -1.11
ZNF440-201ENST00000304060 TNS2Q63HR2 1409 aa8.08□□□□□ -1.12
ZNF440-201ENST00000304060 IFT172Q9UG01 1749 aa8.08□□□□□ -1.12
ZNF440-201ENST00000304060 THSD7AQ9UPZ6 1657 aa8.08□□□□□ -1.12
ZNF440-201ENST00000304060 HSP90AB1P08238 724 aaKnown RBP8.08□□□□□ -1.12
ZNF440-201ENST00000304060 CLSPNQ9HAW4 1339 aa8.08□□□□□ -1.12
ZNF440-201ENST00000304060 CPSF1Q10570 1443 aaKnown RBP8.07□□□□□ -1.12
ZNF440-201ENST00000304060 PRIM1P49642 420 aaKnown RBP8.07□□□□□ -1.12
ZNF440-201ENST00000304060 WWC3Q9ULE0 1092 aa8.07□□□□□ -1.12
ZNF440-201ENST00000304060 TMX4Q9H1E5 349 aaPredicted RBP8.06□□□□□ -1.12
ZNF440-201ENST00000304060 IGSF1Q8N6C5 1336 aa8.06□□□□□ -1.12
ZNF440-201ENST00000304060 TGFB2P61812 414 aa8.06□□□□□ -1.12
ZNF440-201ENST00000304060 CHD4Q14839 1912 aa8.06□□□□□ -1.12
ZNF440-201ENST00000304060 MSL1Q68DK7 614 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms