RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CCDC27Q2M243 656 aa16.57■□□□□ 0.24
SKA3-201ENST00000298260 OTUD7AQ8TE49 926 aaPredicted RBP16.57■□□□□ 0.24
SKA3-201ENST00000298260 BBXQ8WY36 941 aaPredicted RBP16.57■□□□□ 0.24
SKA3-201ENST00000298260 TMPOP42166 694 aaKnown RBP16.55■□□□□ 0.24
SKA3-201ENST00000298260 NUCB2P80303 420 aa16.55■□□□□ 0.24
SKA3-201ENST00000298260 KIAA2012Q0VF49 1180 aa16.55■□□□□ 0.24
SKA3-201ENST00000298260 MYRIPQ8NFW9 859 aa16.55■□□□□ 0.24
SKA3-201ENST00000298260 CFAP53Q96M91 514 aa16.55■□□□□ 0.24
SKA3-201ENST00000298260 MTERF4Q7Z6M4 381 aaKnown RBP16.55■□□□□ 0.24
SKA3-201ENST00000298260 BCL11BQ9C0K0 894 aaPredicted RBP16.55■□□□□ 0.24
SKA3-201ENST00000298260 MLECQ14165 292 aa16.55■□□□□ 0.24
SKA3-201ENST00000298260 UNC13BO14795 1591 aa16.54■□□□□ 0.24
SKA3-201ENST00000298260 ZBTB22O15209 634 aa16.54■□□□□ 0.24
SKA3-201ENST00000298260 CDC45O75419 566 aa16.54■□□□□ 0.24
SKA3-201ENST00000298260 THUMPD2Q9BTF0 503 aaKnown RBP16.54■□□□□ 0.24
SKA3-201ENST00000298260 CFAP65Q6ZU64 1925 aaKnown RBP16.54■□□□□ 0.24
SKA3-201ENST00000298260 TRHP20396 242 aaPredicted RBP16.54■□□□□ 0.24
SKA3-201ENST00000298260 TMEM132EQ6IEE7 984 aa16.54■□□□□ 0.24
SKA3-201ENST00000298260 ZFYVE16Q7Z3T8 1539 aa16.53■□□□□ 0.24
SKA3-201ENST00000298260 USP25Q9UHP3 1055 aa16.53■□□□□ 0.24
SKA3-201ENST00000298260 IQGAP3Q86VI3 1631 aa16.52■□□□□ 0.24
SKA3-201ENST00000298260 ZBTB7BO15156 539 aaPredicted RBP16.52■□□□□ 0.24
SKA3-201ENST00000298260 ATP7AQ04656 1500 aa16.52■□□□□ 0.24
SKA3-201ENST00000298260 PLCB2Q00722 1185 aa16.52■□□□□ 0.23
SKA3-201ENST00000298260 RABEP1Q15276 862 aa16.52■□□□□ 0.23
SKA3-201ENST00000298260 UTP14CQ5TAP6 766 aaKnown RBP16.52■□□□□ 0.23
SKA3-201ENST00000298260 KANK1Q14678 1352 aa16.52■□□□□ 0.23
SKA3-201ENST00000298260 ZNF518AQ6AHZ1 1483 aa16.51■□□□□ 0.23
SKA3-201ENST00000298260 USP26Q9BXU7 913 aa16.51■□□□□ 0.23
SKA3-201ENST00000298260 GADD45BO75293 160 aaPredicted RBP16.51■□□□□ 0.23
SKA3-201ENST00000298260 U2AF2P26368 475 aaKnown RBP eCLIP16.51■□□□□ 0.23
SKA3-201ENST00000298260 SAFB2Q14151 953 aaKnown RBP eCLIP16.51■□□□□ 0.23
SKA3-201ENST00000298260 NOS1P29475 1434 aa16.51■□□□□ 0.23
SKA3-201ENST00000298260 MCM5P33992 734 aa16.51■□□□□ 0.23
SKA3-201ENST00000298260 NOLC1Q14978 699 aaKnown RBP eCLIP16.51■□□□□ 0.23
SKA3-201ENST00000298260 CFAP74Q9C0B2 1584 aa16.5■□□□□ 0.23
SKA3-201ENST00000298260 SMARCA5O60264 1052 aaPredicted RBP16.5■□□□□ 0.23
SKA3-201ENST00000298260 DTNBO60941 627 aa16.5■□□□□ 0.23
SKA3-201ENST00000298260 CHGAP10645 457 aaKnown RBP16.5■□□□□ 0.23
SKA3-201ENST00000298260 GTF2E1P29083 439 aaPredicted RBP16.5■□□□□ 0.23
SKA3-201ENST00000298260 TSPYL6Q8N831 410 aa16.5■□□□□ 0.23
SKA3-201ENST00000298260 VGLL3A8MV65 326 aa16.5■□□□□ 0.23
SKA3-201ENST00000298260 PTPRTO14522 1441 aa16.5■□□□□ 0.23
SKA3-201ENST00000298260 MAPK8IP2Q13387 824 aaPredicted RBP16.5■□□□□ 0.23
SKA3-201ENST00000298260 PLEKHM2Q8IWE5 1019 aa16.5■□□□□ 0.23
SKA3-201ENST00000298260 BCL2L12Q9HB09 334 aa16.5■□□□□ 0.23
SKA3-201ENST00000298260 YEATS2Q9ULM3 1422 aa16.49■□□□□ 0.23
SKA3-201ENST00000298260 IPO8O15397 1037 aaKnown RBP16.49■□□□□ 0.23
SKA3-201ENST00000298260 PLPPR3Q6T4P5 718 aa16.49■□□□□ 0.23
SKA3-201ENST00000298260 FBLN1P23142 703 aa16.49■□□□□ 0.23
SKA3-201ENST00000298260 PLEKHF1Q96S99 279 aa16.49■□□□□ 0.23
SKA3-201ENST00000298260 GGNBP2Q9H3C7 697 aa16.49■□□□□ 0.23
SKA3-201ENST00000298260 ATP10AO60312 1499 aa16.49■□□□□ 0.23
SKA3-201ENST00000298260 DUOX2Q9NRD8 1548 aa16.49■□□□□ 0.23
SKA3-201ENST00000298260 TSPY26PQ9H489 355 aa16.48■□□□□ 0.23
SKA3-201ENST00000298260 UGGT1Q9NYU2 1555 aa16.47■□□□□ 0.23
SKA3-201ENST00000298260 MAST1Q9Y2H9 1570 aa16.47■□□□□ 0.23
SKA3-201ENST00000298260 NUTM2DQ5VT03 806 aaPredicted RBP16.47■□□□□ 0.23
SKA3-201ENST00000298260 GCC1Q96CN9 775 aa16.46■□□□□ 0.23
SKA3-201ENST00000298260 STAC3Q96MF2 364 aa16.46■□□□□ 0.23
SKA3-201ENST00000298260 POGZQ7Z3K3 1410 aa16.46■□□□□ 0.23
SKA3-201ENST00000298260 KIF3AQ9Y496 699 aa16.46■□□□□ 0.23
SKA3-201ENST00000298260 KIDINS220Q9ULH0 1771 aa16.46■□□□□ 0.23
SKA3-201ENST00000298260 CLTCL1P53675 1640 aa16.45■□□□□ 0.22
SKA3-201ENST00000298260 CT47B1P0C2W7 299 aaPredicted RBP16.45■□□□□ 0.22
SKA3-201ENST00000298260 PIBF1Q8WXW3 757 aa16.45■□□□□ 0.22
SKA3-201ENST00000298260 CGNQ9P2M7 1197 aaKnown RBP16.45■□□□□ 0.22
SKA3-201ENST00000298260 ARAP3Q8WWN8 1544 aa16.44■□□□□ 0.22
SKA3-201ENST00000298260 SPHKAPQ2M3C7 1700 aa16.44■□□□□ 0.22
SKA3-201ENST00000298260 ADCY5O95622 1261 aa16.44■□□□□ 0.22
SKA3-201ENST00000298260 NEK4P51957 841 aa16.44■□□□□ 0.22
SKA3-201ENST00000298260 PDE4CQ08493 712 aa16.44■□□□□ 0.22
SKA3-201ENST00000298260 ARHGAP31Q2M1Z3 1444 aa16.44■□□□□ 0.22
SKA3-201ENST00000298260 SDSP20132 328 aa16.44■□□□□ 0.22
SKA3-201ENST00000298260 PDCL2Q8N4E4 241 aa16.44■□□□□ 0.22
SKA3-201ENST00000298260 CABP2Q9NPB3 220 aa16.44■□□□□ 0.22
SKA3-201ENST00000298260 ST18O60284 1047 aa16.43■□□□□ 0.22
SKA3-201ENST00000298260 HCLS1P14317 486 aaPredicted RBP16.43■□□□□ 0.22
SKA3-201ENST00000298260 TTC22Q5TAA0 569 aa16.43■□□□□ 0.22
SKA3-201ENST00000298260 TSHZ3Q63HK5 1081 aa16.43■□□□□ 0.22
SKA3-201ENST00000298260 CHMP4BQ9H444 224 aaKnown RBP16.43■□□□□ 0.22
SKA3-201ENST00000298260 DIP2BQ9P265 1576 aa16.43■□□□□ 0.22
SKA3-201ENST00000298260 TMX3Q96JJ7 454 aa16.42■□□□□ 0.22
SKA3-201ENST00000298260 CWC22Q9HCG8 908 aaKnown RBP16.42■□□□□ 0.22
SKA3-201ENST00000298260 RIOK3O14730 519 aaKnown RBP16.42■□□□□ 0.22
SKA3-201ENST00000298260 ABCC11Q96J66 1382 aa16.42■□□□□ 0.22
SKA3-201ENST00000298260 INO80Q9ULG1 1556 aaPredicted RBP16.42■□□□□ 0.22
SKA3-201ENST00000298260 NAA30Q147X3 362 aaPredicted RBP16.41■□□□□ 0.22
SKA3-201ENST00000298260 SPC24Q8NBT2 197 aa16.41■□□□□ 0.22
SKA3-201ENST00000298260 PYCARDQ9ULZ3 195 aa16.41■□□□□ 0.22
SKA3-201ENST00000298260 GTPBP4Q9BZE4 634 aaKnown RBP16.41■□□□□ 0.22
SKA3-201ENST00000298260 PRIMPOLQ96LW4 560 aa16.41■□□□□ 0.22
SKA3-201ENST00000298260 HMGN5P82970 282 aaKnown RBP16.4■□□□□ 0.22
SKA3-201ENST00000298260 TMEM51Q9NW97 253 aa16.4■□□□□ 0.22
SKA3-201ENST00000298260 INTS3Q68E01 1043 aaKnown RBP16.39■□□□□ 0.21
SKA3-201ENST00000298260 USP48Q86UV5 1035 aa16.39■□□□□ 0.21
SKA3-201ENST00000298260 MRPL50Q8N5N7 158 aaKnown RBP16.39■□□□□ 0.21
SKA3-201ENST00000298260 AP5Z1O43299 807 aa16.39■□□□□ 0.21
SKA3-201ENST00000298260 ZNF771Q7L3S4 317 aaPredicted RBP16.39■□□□□ 0.21
SKA3-201ENST00000298260 LARP6Q9BRS8 491 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms