RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 PANK2Q9BZ23 570 aa30.56■■■□□ 2.48
SPTSSA-201ENST00000298130 GNAI1P63096 354 aa30.55■■■□□ 2.48
SPTSSA-201ENST00000298130 AEBP1Q8IUX7 1158 aa30.55■■■□□ 2.48
SPTSSA-201ENST00000298130 WASLO00401 505 aaPredicted RBP30.55■■■□□ 2.48
SPTSSA-201ENST00000298130 ANKRD26Q9UPS8 1709 aa30.55■■■□□ 2.48
SPTSSA-201ENST00000298130 TRAK2O60296 914 aa30.54■■■□□ 2.48
SPTSSA-201ENST00000298130 NUDT16Q96DE0 195 aaKnown RBP30.54■■■□□ 2.48
SPTSSA-201ENST00000298130 ZNF692Q9BU19 519 aaPredicted RBP30.53■■■□□ 2.48
SPTSSA-201ENST00000298130 XRCC6P12956 609 aaKnown RBP eCLIP30.52■■■□□ 2.483e-10■■■■■ 47.1
SPTSSA-201ENST00000298130 IFT57Q9NWB7 429 aa30.52■■■□□ 2.48
SPTSSA-201ENST00000298130 APBB1O00213 710 aa30.52■■■□□ 2.48
SPTSSA-201ENST00000298130 TBC1D9Q6ZT07 1266 aa30.52■■■□□ 2.48
SPTSSA-201ENST00000298130 COG3Q96JB2 828 aa30.52■■■□□ 2.48
SPTSSA-201ENST00000298130 MAP2P11137 1827 aaKnown RBP30.52■■■□□ 2.48
SPTSSA-201ENST00000298130 CLTCQ00610 1675 aaKnown RBP30.51■■■□□ 2.48
SPTSSA-201ENST00000298130 METP08581 1390 aa30.51■■■□□ 2.48
SPTSSA-201ENST00000298130 HSP90AB1P08238 724 aaKnown RBP30.51■■■□□ 2.48
SPTSSA-201ENST00000298130 RBM25P49756 843 aaKnown RBP30.51■■■□□ 2.47
SPTSSA-201ENST00000298130 RIMS2Q9UQ26 1411 aa30.51■■■□□ 2.47
SPTSSA-201ENST00000298130 BMP2KLQ5H9B9 411 aa30.5■■■□□ 2.47
SPTSSA-201ENST00000298130 KIF20BQ96Q89 1820 aa30.5■■■□□ 2.47
SPTSSA-201ENST00000298130 KIF2CQ99661 725 aa30.5■■■□□ 2.47
SPTSSA-201ENST00000298130 ZNF853P0CG23 659 aa30.49■■■□□ 2.47
SPTSSA-201ENST00000298130 C16orf71Q8IYS4 520 aaPredicted RBP30.49■■■□□ 2.47
SPTSSA-201ENST00000298130 GOLGA6L3A6NEY3 463 aa30.49■■■□□ 2.47
SPTSSA-201ENST00000298130 CFAP44Q96MT7 982 aa30.48■■■□□ 2.47
SPTSSA-201ENST00000298130 GCC1Q96CN9 775 aa30.47■■■□□ 2.47
SPTSSA-201ENST00000298130 EIF5BO60841 1220 aaKnown RBP30.47■■■□□ 2.47
SPTSSA-201ENST00000298130 HSP90AA1P07900 732 aaKnown RBP30.47■■■□□ 2.47
SPTSSA-201ENST00000298130 RRAGDQ9NQL2 400 aaPredicted RBP30.47■■■□□ 2.47
SPTSSA-201ENST00000298130 A2ML1A8K2U0 1454 aa30.46■■■□□ 2.47
SPTSSA-201ENST00000298130 L1TD1Q5T7N2 865 aaKnown RBP30.46■■■□□ 2.47
SPTSSA-201ENST00000298130 MCM10Q7L590 875 aa30.46■■■□□ 2.47
SPTSSA-201ENST00000298130 ABCC4O15439 1325 aa30.45■■■□□ 2.47
SPTSSA-201ENST00000298130 BRPF1P55201 1214 aaPredicted RBP30.45■■■□□ 2.47
SPTSSA-201ENST00000298130 CALD1Q05682 793 aaKnown RBP30.45■■■□□ 2.47
SPTSSA-201ENST00000298130 SULT6B1Q6IMI4 303 aa30.45■■■□□ 2.47
SPTSSA-201ENST00000298130 TNPO1Q92973 898 aaKnown RBP30.45■■■□□ 2.46
SPTSSA-201ENST00000298130 ARHGAP45Q92619 1136 aa30.44■■■□□ 2.46
SPTSSA-201ENST00000298130 ZNF428Q96B54 188 aa30.44■■■□□ 2.46
SPTSSA-201ENST00000298130 CPS1P31327 1500 aa30.44■■■□□ 2.46
SPTSSA-201ENST00000298130 FAM43AQ8N2R8 423 aa30.43■■■□□ 2.46
SPTSSA-201ENST00000298130 OTUD7AQ8TE49 926 aaPredicted RBP30.43■■■□□ 2.46
SPTSSA-201ENST00000298130 MIS18AQ9NYP9 233 aa30.43■■■□□ 2.46
SPTSSA-201ENST00000298130 ATP7BP35670 1465 aa30.43■■■□□ 2.46
SPTSSA-201ENST00000298130 GSPT1P15170 499 aaKnown RBP30.42■■■□□ 2.46
SPTSSA-201ENST00000298130 CCDC61Q9Y6R9 512 aa30.42■■■□□ 2.46
SPTSSA-201ENST00000298130 PTCH1Q13635 1447 aa30.42■■■□□ 2.46
SPTSSA-201ENST00000298130 CPSF1Q10570 1443 aaKnown RBP30.41■■■□□ 2.46
SPTSSA-201ENST00000298130 EDC4Q6P2E9 1401 aaKnown RBP30.4■■■□□ 2.46
SPTSSA-201ENST00000298130 CDC42BPGQ6DT37 1551 aa30.4■■■□□ 2.46
SPTSSA-201ENST00000298130 PRR36Q9H6K5 1346 aa30.4■■■□□ 2.46
SPTSSA-201ENST00000298130 SMARCA5O60264 1052 aaPredicted RBP30.39■■■□□ 2.46
SPTSSA-201ENST00000298130 DDIT3P35638 169 aa30.39■■■□□ 2.46
SPTSSA-201ENST00000298130 SNX21Q969T3 373 aa30.38■■■□□ 2.45
SPTSSA-201ENST00000298130 FSD2A1L4K1 749 aa30.37■■■□□ 2.45
SPTSSA-201ENST00000298130 EIF4A2Q14240 407 aaKnown RBP30.37■■■□□ 2.45
SPTSSA-201ENST00000298130 API5Q9BZZ5 524 aaKnown RBP30.37■■■□□ 2.45
SPTSSA-201ENST00000298130 PIK3R4Q99570 1358 aa30.37■■■□□ 2.45
SPTSSA-201ENST00000298130 TSPOAP1O95153 1857 aa30.36■■■□□ 2.45
SPTSSA-201ENST00000298130 PLEKHM2Q8IWE5 1019 aa30.36■■■□□ 2.45
SPTSSA-201ENST00000298130 HSP90AB2PQ58FF8 381 aa30.36■■■□□ 2.45
SPTSSA-201ENST00000298130 GAS2L2Q8NHY3 880 aa30.35■■■□□ 2.45
SPTSSA-201ENST00000298130 LMOD3Q0VAK6 560 aa30.35■■■□□ 2.45
SPTSSA-201ENST00000298130 CHMP4BQ9H444 224 aaKnown RBP30.34■■■□□ 2.45
SPTSSA-201ENST00000298130 CDK12Q9NYV4 1490 aaPredicted RBP30.32■■■□□ 2.44
SPTSSA-201ENST00000298130 NCOA3Q9Y6Q9 1424 aa30.32■■■□□ 2.44
SPTSSA-201ENST00000298130 FOXO3O43524 673 aa30.32■■■□□ 2.44
SPTSSA-201ENST00000298130 CDC45O75419 566 aa30.32■■■□□ 2.44
SPTSSA-201ENST00000298130 DDX11L8A8MPP1 907 aa30.32■■■□□ 2.44
SPTSSA-201ENST00000298130 SSFA2P28290 1259 aa30.32■■■□□ 2.44
SPTSSA-201ENST00000298130 K7ELQ4 463 aaPredicted RBP30.31■■■□□ 2.44
SPTSSA-201ENST00000298130 PLPPR3Q6T4P5 718 aa30.31■■■□□ 2.44
SPTSSA-201ENST00000298130 ESF1Q9H501 851 aaKnown RBP30.31■■■□□ 2.44
SPTSSA-201ENST00000298130 MEIS3Q99687 375 aa30.3■■■□□ 2.44
SPTSSA-201ENST00000298130 RIMBP3CA6NJZ7 1639 aa30.29■■■□□ 2.44
SPTSSA-201ENST00000298130 RIMBP3BA6NNM3 1639 aa30.29■■■□□ 2.44
SPTSSA-201ENST00000298130 RIMBP3Q9UFD9 1639 aa30.29■■■□□ 2.44
SPTSSA-201ENST00000298130 DCTPP1Q9H773 170 aa30.29■■■□□ 2.44
SPTSSA-201ENST00000298130 DLG5Q8TDM6 1919 aa30.29■■■□□ 2.44
SPTSSA-201ENST00000298130 AATKQ6ZMQ8 1374 aa30.28■■■□□ 2.44
SPTSSA-201ENST00000298130 RAB3GAP1Q15042 981 aa30.28■■■□□ 2.44
SPTSSA-201ENST00000298130 DLC1Q96QB1 1528 aa30.28■■■□□ 2.44
SPTSSA-201ENST00000298130 SLC4A10Q6U841 1118 aa30.27■■■□□ 2.44
SPTSSA-201ENST00000298130 GAS2L3Q86XJ1 694 aa30.27■■■□□ 2.44
SPTSSA-201ENST00000298130 F6X3S4 739 aa30.27■■■□□ 2.44
SPTSSA-201ENST00000298130 ACEP12821 1306 aa30.25■■■□□ 2.43
SPTSSA-201ENST00000298130 SLC4A2P04920 1241 aa30.25■■■□□ 2.43
SPTSSA-201ENST00000298130 GRPEL1Q9HAV7 217 aa30.25■■■□□ 2.43
SPTSSA-201ENST00000298130 TTC22Q5TAA0 569 aa30.25■■■□□ 2.43
SPTSSA-201ENST00000298130 MSH6P52701 1360 aa30.24■■■□□ 2.43
SPTSSA-201ENST00000298130 CEP85Q6P2H3 762 aa30.24■■■□□ 2.43
SPTSSA-201ENST00000298130 KNDC1Q76NI1 1749 aa30.24■■■□□ 2.43
SPTSSA-201ENST00000298130 G2E3Q7L622 706 aa30.24■■■□□ 2.43
SPTSSA-201ENST00000298130 TTC21BQ7Z4L5 1316 aa30.24■■■□□ 2.43
SPTSSA-201ENST00000298130 ROBO2Q9HCK4 1378 aa30.24■■■□□ 2.43
SPTSSA-201ENST00000298130 INTS3Q68E01 1043 aaKnown RBP30.23■■■□□ 2.43
SPTSSA-201ENST00000298130 GBP4Q96PP9 640 aa30.23■■■□□ 2.43
SPTSSA-201ENST00000298130 SETD1AO15047 1707 aaKnown RBP30.22■■■□□ 2.43
SPTSSA-201ENST00000298130 CHL1O00533 1208 aa30.22■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms