RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 MRPL50Q8N5N7 158 aaKnown RBP20.91■□□□□ 0.94
VPS54-201ENST00000272322 ARHGEF40Q8TER5 1519 aa20.91■□□□□ 0.94
VPS54-201ENST00000272322 A2ML1A8K2U0 1454 aa20.9■□□□□ 0.94
VPS54-201ENST00000272322 TMEM131LA2VDJ0 1609 aa20.89■□□□□ 0.94
VPS54-201ENST00000272322 ZBTB7BO15156 539 aaPredicted RBP20.89■□□□□ 0.93
VPS54-201ENST00000272322 NLRP1Q9C000 1473 aa20.89■□□□□ 0.93
VPS54-201ENST00000272322 ZFYVE9O95405 1425 aa20.89■□□□□ 0.93
VPS54-201ENST00000272322 RBM42Q9BTD8 480 aaKnown RBP20.88■□□□□ 0.93
VPS54-201ENST00000272322 CT47B1P0C2W7 299 aaPredicted RBP20.88■□□□□ 0.93
VPS54-201ENST00000272322 F6X3S4 739 aa20.88■□□□□ 0.93
VPS54-201ENST00000272322 HDAC1Q13547 482 aaPredicted RBP20.88■□□□□ 0.93
VPS54-201ENST00000272322 SMARCA5O60264 1052 aaPredicted RBP20.87■□□□□ 0.93
VPS54-201ENST00000272322 HSP90AA1P07900 732 aaKnown RBP20.87■□□□□ 0.93
VPS54-201ENST00000272322 SMC5Q8IY18 1101 aa20.87■□□□□ 0.93
VPS54-201ENST00000272322 ZNF428Q96B54 188 aa20.87■□□□□ 0.93
VPS54-201ENST00000272322 SIRT2Q8IXJ6 389 aa20.87■□□□□ 0.93
VPS54-201ENST00000272322 COL3A1P02461 1466 aaPredicted RBP20.87■□□□□ 0.93
VPS54-201ENST00000272322 RICTORQ6R327 1708 aa20.87■□□□□ 0.93
VPS54-201ENST00000272322 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.86■□□□□ 0.93
VPS54-201ENST00000272322 PREX1Q8TCU6 1659 aa20.86■□□□□ 0.93
VPS54-201ENST00000272322 ROBO2Q9HCK4 1378 aa20.86■□□□□ 0.93
VPS54-201ENST00000272322 PNPLA6Q8IY17 1366 aa20.86■□□□□ 0.93
VPS54-201ENST00000272322 IL16Q14005 1332 aa20.86■□□□□ 0.93
VPS54-201ENST00000272322 AMPHP49418 695 aa20.85■□□□□ 0.93
VPS54-201ENST00000272322 OTUD7AQ8TE49 926 aaPredicted RBP20.85■□□□□ 0.93
VPS54-201ENST00000272322 CFAP44Q96MT7 982 aa20.85■□□□□ 0.93
VPS54-201ENST00000272322 HDGFP51858 240 aaKnown RBP20.84■□□□□ 0.93
VPS54-201ENST00000272322 LRRC7Q96NW7 1537 aa20.84■□□□□ 0.93
VPS54-201ENST00000272322 NUCB1Q02818 461 aa20.84■□□□□ 0.93
VPS54-201ENST00000272322 ALDH1L2Q3SY69 923 aa20.84■□□□□ 0.93
VPS54-201ENST00000272322 AMOTL2Q9Y2J4 779 aa20.84■□□□□ 0.93
VPS54-201ENST00000272322 TTC21BQ7Z4L5 1316 aa20.83■□□□□ 0.93
VPS54-201ENST00000272322 IFT57Q9NWB7 429 aa20.83■□□□□ 0.93
VPS54-201ENST00000272322 SLC4A2P04920 1241 aa20.83■□□□□ 0.92
VPS54-201ENST00000272322 AAMPQ13685 434 aa20.83■□□□□ 0.92
VPS54-201ENST00000272322 USHBP1Q8N6Y0 703 aa20.83■□□□□ 0.92
VPS54-201ENST00000272322 NLRP6P59044 892 aa20.81■□□□□ 0.92
VPS54-201ENST00000272322 CALD1Q05682 793 aaKnown RBP20.81■□□□□ 0.92
VPS54-201ENST00000272322 HSCBQ8IWL3 235 aa20.81■□□□□ 0.92
VPS54-201ENST00000272322 CPS1P31327 1500 aa20.81■□□□□ 0.92
VPS54-201ENST00000272322 TSHZ3Q63HK5 1081 aa20.81■□□□□ 0.92
VPS54-201ENST00000272322 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.8■□□□□ 0.92
VPS54-201ENST00000272322 FAM135BQ49AJ0 1406 aa20.8■□□□□ 0.92
VPS54-201ENST00000272322 LMOD2Q6P5Q4 547 aa20.8■□□□□ 0.92
VPS54-201ENST00000272322 G2E3Q7L622 706 aa20.8■□□□□ 0.92
VPS54-201ENST00000272322 CLTCQ00610 1675 aaKnown RBP20.8■□□□□ 0.92
VPS54-201ENST00000272322 TRHP20396 242 aaPredicted RBP20.79■□□□□ 0.92
VPS54-201ENST00000272322 RTF1Q92541 710 aaKnown RBP20.79■□□□□ 0.92
VPS54-201ENST00000272322 HSP90AB1P08238 724 aaKnown RBP20.79■□□□□ 0.92
VPS54-201ENST00000272322 MEIS3Q99687 375 aa20.79■□□□□ 0.92
VPS54-201ENST00000272322 TNRQ92752 1358 aa20.78■□□□□ 0.92
VPS54-201ENST00000272322 TSPYL4Q9UJ04 414 aa20.78■□□□□ 0.92
VPS54-201ENST00000272322 EID1Q9Y6B2 187 aa20.78■□□□□ 0.92
VPS54-201ENST00000272322 ZNF692Q9BU19 519 aaPredicted RBP20.78■□□□□ 0.92
VPS54-201ENST00000272322 CD2BP2O95400 341 aaKnown RBP20.77■□□□□ 0.92
VPS54-201ENST00000272322 EDC4Q6P2E9 1401 aaKnown RBP20.77■□□□□ 0.92
VPS54-201ENST00000272322 LMOD3Q0VAK6 560 aa20.77■□□□□ 0.91
VPS54-201ENST00000272322 MTHFSDQ2M296 383 aaKnown RBP20.77■□□□□ 0.91
VPS54-201ENST00000272322 TBC1D9Q6ZT07 1266 aa20.77■□□□□ 0.91
VPS54-201ENST00000272322 ANTXR1Q9H6X2 564 aa20.76■□□□□ 0.91
VPS54-201ENST00000272322 MAP3K19Q56UN5 1328 aa20.76■□□□□ 0.91
VPS54-201ENST00000272322 XPCQ01831 940 aaPredicted RBP20.76■□□□□ 0.91
VPS54-201ENST00000272322 MAP2P11137 1827 aaKnown RBP20.75■□□□□ 0.91
VPS54-201ENST00000272322 ZNF853P0CG23 659 aa20.75■□□□□ 0.91
VPS54-201ENST00000272322 API5Q9BZZ5 524 aaKnown RBP20.74■□□□□ 0.91
VPS54-201ENST00000272322 ADGRB2O60241 1585 aa20.73■□□□□ 0.91
VPS54-201ENST00000272322 CPSF1Q10570 1443 aaKnown RBP20.72■□□□□ 0.91
VPS54-201ENST00000272322 TMEM2Q9UHN6 1383 aa20.72■□□□□ 0.91
VPS54-201ENST00000272322 ABTB2Q8N961 1025 aa20.72■□□□□ 0.91
VPS54-201ENST00000272322 EXOC6BQ9Y2D4 811 aa20.72■□□□□ 0.91
VPS54-201ENST00000272322 USP32Q8NFA0 1604 aa20.71■□□□□ 0.91
VPS54-201ENST00000272322 EYA1Q99502 592 aa20.71■□□□□ 0.91
VPS54-201ENST00000272322 PPP6R1Q9UPN7 881 aa20.71■□□□□ 0.91
VPS54-201ENST00000272322 EIF2S2P20042 333 aaKnown RBP20.7■□□□□ 0.91
VPS54-201ENST00000272322 NOL8Q76FK4 1167 aaKnown RBP20.7■□□□□ 0.9
VPS54-201ENST00000272322 GSPT1P15170 499 aaKnown RBP20.7■□□□□ 0.9
VPS54-201ENST00000272322 GCC1Q96CN9 775 aa20.7■□□□□ 0.9
VPS54-201ENST00000272322 NCBP3Q53F19 620 aaKnown RBP20.69■□□□□ 0.9
VPS54-201ENST00000272322 FOXD4L5Q5VV16 416 aaPredicted RBP20.69■□□□□ 0.9
VPS54-201ENST00000272322 FOXD4L4Q8WXT5 416 aaPredicted RBP20.69■□□□□ 0.9
VPS54-201ENST00000272322 FKBP5Q13451 457 aaPredicted RBP20.69■□□□□ 0.9
VPS54-201ENST00000272322 KCNA6P17658 529 aa20.69■□□□□ 0.9
VPS54-201ENST00000272322 RIMBP3CA6NJZ7 1639 aa20.68■□□□□ 0.9
VPS54-201ENST00000272322 RIMBP3BA6NNM3 1639 aa20.68■□□□□ 0.9
VPS54-201ENST00000272322 RIMBP3Q9UFD9 1639 aa20.68■□□□□ 0.9
VPS54-201ENST00000272322 MCM4P33991 863 aa20.68■□□□□ 0.9
VPS54-201ENST00000272322 ATP7BP35670 1465 aa20.68■□□□□ 0.9
VPS54-201ENST00000272322 ABCC4O15439 1325 aa20.68■□□□□ 0.9
VPS54-201ENST00000272322 TPRNQ4KMQ1 711 aa20.68■□□□□ 0.9
VPS54-201ENST00000272322 CHL1O00533 1208 aa20.67■□□□□ 0.9
VPS54-201ENST00000272322 ANXA1P04083 346 aa20.67■□□□□ 0.9
VPS54-201ENST00000272322 BMP2KLQ5H9B9 411 aa20.67■□□□□ 0.9
VPS54-201ENST00000272322 PLEKHM2Q8IWE5 1019 aa20.67■□□□□ 0.9
VPS54-201ENST00000272322 ANO8Q9HCE9 1232 aaPredicted RBP20.67■□□□□ 0.9
VPS54-201ENST00000272322 CHMP5Q9NZZ3 219 aa20.67■□□□□ 0.9
VPS54-201ENST00000272322 DIP2BQ9P265 1576 aa20.66■□□□□ 0.9
VPS54-201ENST00000272322 ARHGAP45Q92619 1136 aa20.66■□□□□ 0.9
VPS54-201ENST00000272322 MED14O60244 1454 aa20.66■□□□□ 0.9
VPS54-201ENST00000272322 PANK2Q9BZ23 570 aa20.65■□□□□ 0.9
VPS54-201ENST00000272322 MSH6P52701 1360 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms