RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 RTEL1-TNFRSF6BF6WH68 1400 aa12.85□□□□□ -0.35
CD44-201ENST00000263398 TMEM57Q8N5G2 664 aa12.84□□□□□ -0.35
CD44-201ENST00000263398 NSD3Q9BZ95 1437 aa12.84□□□□□ -0.35
CD44-201ENST00000263398 ZNF396Q96N95 335 aaPredicted RBP12.84□□□□□ -0.35
CD44-201ENST00000263398 RAD21O60216 631 aa12.84□□□□□ -0.35
CD44-201ENST00000263398 TRIM34Q9BYJ4 488 aa12.84□□□□□ -0.35
CD44-201ENST00000263398 CCDC192P0DO97 292 aa12.83□□□□□ -0.36
CD44-201ENST00000263398 SETQ01105 290 aaPredicted RBP12.83□□□□□ -0.36
CD44-201ENST00000263398 ACBD3Q9H3P7 528 aa12.83□□□□□ -0.36
CD44-201ENST00000263398 RARSP54136 660 aaKnown RBP12.83□□□□□ -0.36
CD44-201ENST00000263398 KRT85P78386 507 aa12.83□□□□□ -0.36
CD44-201ENST00000263398 CAMSAP2Q08AD1 1489 aa12.83□□□□□ -0.36
CD44-201ENST00000263398 MAGI1Q96QZ7 1491 aaPredicted RBP12.83□□□□□ -0.36
CD44-201ENST00000263398 ESCO1Q5FWF5 840 aa12.82□□□□□ -0.36
CD44-201ENST00000263398 STK38Q15208 465 aa12.82□□□□□ -0.36
CD44-201ENST00000263398 ZNF530Q6P9A1 599 aaPredicted RBP12.82□□□□□ -0.36
CD44-201ENST00000263398 NCOA1Q15788 1441 aa12.82□□□□□ -0.36
CD44-201ENST00000263398 CCDC61Q9Y6R9 512 aa12.82□□□□□ -0.36
CD44-201ENST00000263398 HSP90B2PQ58FF3 399 aa12.81□□□□□ -0.36
CD44-201ENST00000263398 PDILTQ8N807 584 aa12.81□□□□□ -0.36
CD44-201ENST00000263398 JMYQ8N9B5 988 aa12.81□□□□□ -0.36
CD44-201ENST00000263398 FMNL2Q96PY5 1086 aa12.81□□□□□ -0.36
CD44-201ENST00000263398 CCDC141Q6ZP82 1450 aa12.81□□□□□ -0.36
CD44-201ENST00000263398 SRGAP3O43295 1099 aa12.81□□□□□ -0.36
CD44-201ENST00000263398 TATP17735 454 aaPredicted RBP12.81□□□□□ -0.36
CD44-201ENST00000263398 C20orf194Q5TEA3 1177 aa12.81□□□□□ -0.36
CD44-201ENST00000263398 ABCC11Q96J66 1382 aa12.81□□□□□ -0.36
CD44-201ENST00000263398 LARP1BQ659C4 914 aaKnown RBP12.8□□□□□ -0.36
CD44-201ENST00000263398 THEMISQ8N1K5 641 aaPredicted RBP12.8□□□□□ -0.36
CD44-201ENST00000263398 SSH1Q8WYL5 1049 aa12.8□□□□□ -0.36
CD44-201ENST00000263398 TCEAL9Q9UHQ7 104 aa12.8□□□□□ -0.36
CD44-201ENST00000263398 ESPNB1AK53 854 aa12.8□□□□□ -0.36
CD44-201ENST00000263398 PDIA4P13667 645 aaKnown RBP12.8□□□□□ -0.36
CD44-201ENST00000263398 BLOC1S2Q6QNY1 142 aa12.8□□□□□ -0.36
CD44-201ENST00000263398 RBM33Q96EV2 1170 aaKnown RBP12.8□□□□□ -0.36
CD44-201ENST00000263398 RRS1Q15050 365 aaKnown RBP12.8□□□□□ -0.36
CD44-201ENST00000263398 CCDC158Q5M9N0 1113 aa12.8□□□□□ -0.36
CD44-201ENST00000263398 SMC2O95347 1197 aa12.79□□□□□ -0.36
CD44-201ENST00000263398 ALDH1L2Q3SY69 923 aa12.79□□□□□ -0.36
CD44-201ENST00000263398 ZSCAN31Q96LW9 406 aaPredicted RBP12.79□□□□□ -0.36
CD44-201ENST00000263398 ATP2B1P20020 1258 aa12.79□□□□□ -0.36
CD44-201ENST00000263398 NKTRP30414 1462 aaKnown RBP12.79□□□□□ -0.36
CD44-201ENST00000263398 DHX8Q14562 1220 aaKnown RBP12.79□□□□□ -0.36
CD44-201ENST00000263398 CCP110O43303 1012 aa12.79□□□□□ -0.36
CD44-201ENST00000263398 RUFY1Q96T51 708 aa12.79□□□□□ -0.36
CD44-201ENST00000263398 TNMDQ9H2S6 317 aa12.79□□□□□ -0.36
CD44-201ENST00000263398 KIF21AQ7Z4S6 1674 aa12.79□□□□□ -0.36
CD44-201ENST00000263398 MSH5O43196 834 aa12.78□□□□□ -0.36
CD44-201ENST00000263398 CEBPZQ03701 1054 aaKnown RBP12.78□□□□□ -0.36
CD44-201ENST00000263398 FYB1O15117 783 aa12.78□□□□□ -0.36
CD44-201ENST00000263398 FILIP1LQ4L180 1135 aa12.78□□□□□ -0.36
CD44-201ENST00000263398 IL1RAPL2Q9NP60 686 aa12.78□□□□□ -0.36
CD44-201ENST00000263398 NAP1L1P55209 391 aaKnown RBP12.78□□□□□ -0.36
CD44-201ENST00000263398 SIL1Q9H173 461 aa12.78□□□□□ -0.36
CD44-201ENST00000263398 RPRD2Q5VT52 1461 aaKnown RBP12.77□□□□□ -0.36
CD44-201ENST00000263398 MAPKBP1O60336 1514 aa12.77□□□□□ -0.36
CD44-201ENST00000263398 OFD1O75665 1012 aa12.77□□□□□ -0.36
CD44-201ENST00000263398 KIF6Q6ZMV9 814 aa12.77□□□□□ -0.36
CD44-201ENST00000263398 SPC24Q8NBT2 197 aa12.77□□□□□ -0.36
CD44-201ENST00000263398 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.77□□□□□ -0.36
CD44-201ENST00000263398 LRPPRCP42704 1394 aaKnown RBP12.77□□□□□ -0.36
CD44-201ENST00000263398 DUSP27Q5VZP5 1158 aa12.77□□□□□ -0.37
CD44-201ENST00000263398 PROSER2Q86WR7 435 aaPredicted RBP12.77□□□□□ -0.37
CD44-201ENST00000263398 AK7Q96M32 723 aa12.77□□□□□ -0.37
CD44-201ENST00000263398 CTDP1Q9Y5B0 961 aaPredicted RBP12.77□□□□□ -0.37
CD44-201ENST00000263398 AACSQ86V21 672 aa12.77□□□□□ -0.37
CD44-201ENST00000263398 PPP6R1Q9UPN7 881 aa12.77□□□□□ -0.37
CD44-201ENST00000263398 ME1P48163 572 aa12.76□□□□□ -0.37
CD44-201ENST00000263398 STK3Q13188 491 aa12.76□□□□□ -0.37
CD44-201ENST00000263398 KRT32Q14532 448 aa12.76□□□□□ -0.37
CD44-201ENST00000263398 CDR1P51861 262 aa12.76□□□□□ -0.37
CD44-201ENST00000263398 NUDT16Q96DE0 195 aaKnown RBP12.76□□□□□ -0.37
CD44-201ENST00000263398 PDRG1Q9NUG6 133 aa12.76□□□□□ -0.37
CD44-201ENST00000263398 EXOC6BQ9Y2D4 811 aa12.76□□□□□ -0.37
CD44-201ENST00000263398 PIP4K2AP48426 406 aaPredicted RBP12.76□□□□□ -0.37
CD44-201ENST00000263398 JAKMIP1Q96N16 626 aaKnown RBP12.76□□□□□ -0.37
CD44-201ENST00000263398 THUMPD2Q9BTF0 503 aaKnown RBP12.76□□□□□ -0.37
CD44-201ENST00000263398 TTC39AQ5SRH9 613 aa12.76□□□□□ -0.37
CD44-201ENST00000263398 CNNM1Q9NRU3 951 aa12.76□□□□□ -0.37
CD44-201ENST00000263398 MAP4K4O95819 1239 aaPredicted RBP12.75□□□□□ -0.37
CD44-201ENST00000263398 TXLNAP40222 546 aa12.75□□□□□ -0.37
CD44-201ENST00000263398 CWC27Q6UX04 472 aaKnown RBP12.75□□□□□ -0.37
CD44-201ENST00000263398 CCDC43Q96MW1 224 aaKnown RBP12.75□□□□□ -0.37
CD44-201ENST00000263398 CFAP45Q9UL16 551 aa12.75□□□□□ -0.37
CD44-201ENST00000263398 NUP153P49790 1475 aaKnown RBP12.75□□□□□ -0.37
CD44-201ENST00000263398 SMARCE1Q969G3 411 aa12.75□□□□□ -0.37
CD44-201ENST00000263398 SLC26A8Q96RN1 970 aa12.75□□□□□ -0.37
CD44-201ENST00000263398 RRP12Q5JTH9 1297 aaKnown RBP12.75□□□□□ -0.37
CD44-201ENST00000263398 TRIM22Q8IYM9 498 aa12.75□□□□□ -0.37
CD44-201ENST00000263398 ERCC4Q92889 916 aaPredicted RBP12.75□□□□□ -0.37
CD44-201ENST00000263398 KIF1BPQ96EK5 621 aa12.74□□□□□ -0.37
CD44-201ENST00000263398 SKAP1Q86WV1 359 aa12.74□□□□□ -0.37
CD44-201ENST00000263398 SPATA32Q96LK8 384 aa12.74□□□□□ -0.37
CD44-201ENST00000263398 SPG7Q9UQ90 795 aa12.74□□□□□ -0.37
CD44-201ENST00000263398 KDM4AO75164 1064 aa12.74□□□□□ -0.37
CD44-201ENST00000263398 SLC3A2P08195 630 aaKnown RBP12.74□□□□□ -0.37
CD44-201ENST00000263398 CABP4P57796 275 aa12.74□□□□□ -0.37
CD44-201ENST00000263398 RBM42Q9BTD8 480 aaKnown RBP12.74□□□□□ -0.37
CD44-201ENST00000263398 BCL11BQ9C0K0 894 aaPredicted RBP12.74□□□□□ -0.37
CD44-201ENST00000263398 NACAP1Q9BZK3 213 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms