RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ATF7IPQ6VMQ6 1270 aa12.7□□□□□ -0.38
LIG3-201ENST00000262327 ROBO2Q9HCK4 1378 aa12.69□□□□□ -0.38
LIG3-201ENST00000262327 HMOX1P09601 288 aa12.68□□□□□ -0.38
LIG3-201ENST00000262327 CDK19Q9BWU1 502 aa12.68□□□□□ -0.38
LIG3-201ENST00000262327 AMOTL2Q9Y2J4 779 aa12.68□□□□□ -0.38
LIG3-201ENST00000262327 NPHP4O75161 1426 aaPredicted RBP12.68□□□□□ -0.38
LIG3-201ENST00000262327 XRN1Q8IZH2 1706 aaKnown RBP12.68□□□□□ -0.38
LIG3-201ENST00000262327 KDM4FA0A1W2PPD8 638 aa12.68□□□□□ -0.38
LIG3-201ENST00000262327 FOXD4L1Q9NU39 408 aa12.68□□□□□ -0.38
LIG3-201ENST00000262327 ADGRB2O60241 1585 aa12.67□□□□□ -0.38
LIG3-201ENST00000262327 DDX19BQ9UMR2 479 aa12.67□□□□□ -0.38
LIG3-201ENST00000262327 CABP1Q9NZU7 370 aa12.67□□□□□ -0.38
LIG3-201ENST00000262327 WASLO00401 505 aaPredicted RBP12.66□□□□□ -0.38
LIG3-201ENST00000262327 DIAPH1O60610 1272 aaKnown RBP12.66□□□□□ -0.38
LIG3-201ENST00000262327 VIRMAQ69YN4 1812 aaKnown RBP12.66□□□□□ -0.38
LIG3-201ENST00000262327 PANK2Q9BZ23 570 aa12.65□□□□□ -0.38
LIG3-201ENST00000262327 PRKAR2BP31323 418 aa12.65□□□□□ -0.38
LIG3-201ENST00000262327 USP32Q8NFA0 1604 aa12.65□□□□□ -0.38
LIG3-201ENST00000262327 MCM4P33991 863 aa12.65□□□□□ -0.38
LIG3-201ENST00000262327 AAMPQ13685 434 aa12.65□□□□□ -0.38
LIG3-201ENST00000262327 ZBTB40Q9NUA8 1239 aa12.64□□□□□ -0.39
LIG3-201ENST00000262327 PHACTR3Q96KR7 559 aa12.64□□□□□ -0.39
LIG3-201ENST00000262327 TSPYL6Q8N831 410 aa12.63□□□□□ -0.39
LIG3-201ENST00000262327 TERF2IPQ9NYB0 399 aa12.63□□□□□ -0.39
LIG3-201ENST00000262327 CHD2O14647 1828 aaKnown RBP12.63□□□□□ -0.39
LIG3-201ENST00000262327 HDAC1Q13547 482 aaPredicted RBP12.63□□□□□ -0.39
LIG3-201ENST00000262327 ANKRD45Q5TZF3 282 aa12.63□□□□□ -0.39
LIG3-201ENST00000262327 RRAGDQ9NQL2 400 aaPredicted RBP12.63□□□□□ -0.39
LIG3-201ENST00000262327 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.63□□□□□ -0.39
LIG3-201ENST00000262327 HSCBQ8IWL3 235 aa12.62□□□□□ -0.39
LIG3-201ENST00000262327 SMC5Q8IY18 1101 aa12.62□□□□□ -0.39
LIG3-201ENST00000262327 NCKAP5LQ9HCH0 1330 aa12.62□□□□□ -0.39
LIG3-201ENST00000262327 ATP7BP35670 1465 aa12.62□□□□□ -0.39
LIG3-201ENST00000262327 XRCC6P12956 609 aaKnown RBP eCLIP12.62□□□□□ -0.39
LIG3-201ENST00000262327 ZRANB1Q9UGI0 708 aa12.62□□□□□ -0.39
LIG3-201ENST00000262327 NSD2O96028 1365 aa12.61□□□□□ -0.39
LIG3-201ENST00000262327 TRAK2O60296 914 aa12.61□□□□□ -0.39
LIG3-201ENST00000262327 HDGFL2Q7Z4V5 671 aaPredicted RBP12.61□□□□□ -0.39
LIG3-201ENST00000262327 CHMP5Q9NZZ3 219 aa12.61□□□□□ -0.39
LIG3-201ENST00000262327 KCNA6P17658 529 aa12.6□□□□□ -0.39
LIG3-201ENST00000262327 RBM42Q9BTD8 480 aaKnown RBP12.6□□□□□ -0.39
LIG3-201ENST00000262327 EMILIN1Q9Y6C2 1016 aa12.6□□□□□ -0.39
LIG3-201ENST00000262327 CD163L1Q9NR16 1453 aa12.6□□□□□ -0.39
LIG3-201ENST00000262327 GOLGA6L3A6NEY3 463 aa12.6□□□□□ -0.39
LIG3-201ENST00000262327 CHD1LQ86WJ1 897 aa12.6□□□□□ -0.39
LIG3-201ENST00000262327 NUDT16Q96DE0 195 aaKnown RBP12.6□□□□□ -0.39
LIG3-201ENST00000262327 NWD1Q149M9 1564 aa12.6□□□□□ -0.39
LIG3-201ENST00000262327 IPO8O15397 1037 aaKnown RBP12.6□□□□□ -0.39
LIG3-201ENST00000262327 CT47B1P0C2W7 299 aaPredicted RBP12.6□□□□□ -0.39
LIG3-201ENST00000262327 FAM43AQ8N2R8 423 aa12.6□□□□□ -0.39
LIG3-201ENST00000262327 CCDC61Q9Y6R9 512 aa12.6□□□□□ -0.39
LIG3-201ENST00000262327 A0A0U1RQG5 324 aaPredicted RBP12.59□□□□□ -0.39
LIG3-201ENST00000262327 NUCB1Q02818 461 aa12.59□□□□□ -0.39
LIG3-201ENST00000262327 DCTN1Q14203 1278 aa12.59□□□□□ -0.39
LIG3-201ENST00000262327 FAM83GA6ND36 823 aa12.59□□□□□ -0.39
LIG3-201ENST00000262327 CD2BP2O95400 341 aaKnown RBP12.59□□□□□ -0.39
LIG3-201ENST00000262327 POLKQ9UBT6 870 aa12.58□□□□□ -0.39
LIG3-201ENST00000262327 KIF16BQ96L93 1317 aa12.58□□□□□ -0.39
LIG3-201ENST00000262327 PPIP5K1Q6PFW1 1433 aa12.58□□□□□ -0.4
LIG3-201ENST00000262327 HSP90AB1P08238 724 aaKnown RBP12.58□□□□□ -0.4
LIG3-201ENST00000262327 L1TD1Q5T7N2 865 aaKnown RBP12.58□□□□□ -0.4
LIG3-201ENST00000262327 LMTK3Q96Q04 1460 aa12.58□□□□□ -0.4
LIG3-201ENST00000262327 CPSF1Q10570 1443 aaKnown RBP12.58□□□□□ -0.4
LIG3-201ENST00000262327 HSP90AA1P07900 732 aaKnown RBP12.57□□□□□ -0.4
LIG3-201ENST00000262327 COL3A1P02461 1466 aaPredicted RBP12.57□□□□□ -0.4
LIG3-201ENST00000262327 APBB1O00213 710 aa12.57□□□□□ -0.4
LIG3-201ENST00000262327 RRS1Q15050 365 aaKnown RBP12.57□□□□□ -0.4
LIG3-201ENST00000262327 CDC42BPGQ6DT37 1551 aa12.57□□□□□ -0.4
LIG3-201ENST00000262327 NME9Q86XW9 330 aa12.56□□□□□ -0.4
LIG3-201ENST00000262327 ANKARQ7Z5J8 1434 aa12.56□□□□□ -0.4
LIG3-201ENST00000262327 TOPAZ1Q8N9V7 1692 aa12.56□□□□□ -0.4
LIG3-201ENST00000262327 PRR36Q9H6K5 1346 aa12.56□□□□□ -0.4
LIG3-201ENST00000262327 PLEKHG3A1L390 1219 aa12.56□□□□□ -0.4
LIG3-201ENST00000262327 ZBTB7BO15156 539 aaPredicted RBP12.56□□□□□ -0.4
LIG3-201ENST00000262327 VAMP4O75379 141 aa12.56□□□□□ -0.4
LIG3-201ENST00000262327 ZNF692Q9BU19 519 aaPredicted RBP12.56□□□□□ -0.4
LIG3-201ENST00000262327 FCHSD2O94868 740 aa12.56□□□□□ -0.4
LIG3-201ENST00000262327 SIRT2Q8IXJ6 389 aa12.56□□□□□ -0.4
LIG3-201ENST00000262327 IL16Q14005 1332 aa12.55□□□□□ -0.4
LIG3-201ENST00000262327 C8orf58Q8NAV2 365 aa12.55□□□□□ -0.4
LIG3-201ENST00000262327 TNPO1Q92973 898 aaKnown RBP12.55□□□□□ -0.4
LIG3-201ENST00000262327 MBIPQ9NS73 344 aa12.55□□□□□ -0.4
LIG3-201ENST00000262327 KRT24Q2M2I5 525 aa12.55□□□□□ -0.4
LIG3-201ENST00000262327 MRPL50Q8N5N7 158 aaKnown RBP12.55□□□□□ -0.4
LIG3-201ENST00000262327 EDC4Q6P2E9 1401 aaKnown RBP12.54□□□□□ -0.4
LIG3-201ENST00000262327 TBC1D9Q6ZT07 1266 aa12.54□□□□□ -0.4
LIG3-201ENST00000262327 ADGRL3Q9HAR2 1447 aa12.54□□□□□ -0.4
LIG3-201ENST00000262327 NFE2L2Q16236 605 aa12.53□□□□□ -0.4
LIG3-201ENST00000262327 ALDH1L2Q3SY69 923 aa12.53□□□□□ -0.4
LIG3-201ENST00000262327 ITSN1Q15811 1721 aa12.53□□□□□ -0.4
LIG3-201ENST00000262327 C16orf71Q8IYS4 520 aaPredicted RBP12.53□□□□□ -0.4
LIG3-201ENST00000262327 KIF2CQ99661 725 aa12.53□□□□□ -0.4
LIG3-201ENST00000262327 FMN2Q9NZ56 1722 aa12.53□□□□□ -0.4
LIG3-201ENST00000262327 AKAP12Q02952 1782 aa12.53□□□□□ -0.4
LIG3-201ENST00000262327 NUTM2FA1L443 756 aa12.53□□□□□ -0.4
LIG3-201ENST00000262327 FSD2A1L4K1 749 aa12.53□□□□□ -0.4
LIG3-201ENST00000262327 SOX12O15370 315 aa12.53□□□□□ -0.4
LIG3-201ENST00000262327 HSPA2P54652 639 aa12.53□□□□□ -0.4
LIG3-201ENST00000262327 TWISTNBQ3B726 338 aaPredicted RBP12.53□□□□□ -0.4
LIG3-201ENST00000262327 NCBP3Q53F19 620 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms