RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 PHACTR3Q96KR7 559 aa16.25■□□□□ 0.19
SNX1-201ENST00000261889 TMEM2Q9UHN6 1383 aa16.25■□□□□ 0.19
SNX1-201ENST00000261889 ARHGEF28Q8N1W1 1705 aaKnown RBP16.25■□□□□ 0.19
SNX1-201ENST00000261889 ZRANB1Q9UGI0 708 aa16.25■□□□□ 0.19
SNX1-201ENST00000261889 PRKAR2BP31323 418 aa16.24■□□□□ 0.19
SNX1-201ENST00000261889 DDX19BQ9UMR2 479 aa16.24■□□□□ 0.19
SNX1-201ENST00000261889 SMARCA5O60264 1052 aaPredicted RBP16.24■□□□□ 0.19
SNX1-201ENST00000261889 TSHZ3Q63HK5 1081 aa16.24■□□□□ 0.19
SNX1-201ENST00000261889 CHD1LQ86WJ1 897 aa16.24■□□□□ 0.19
SNX1-201ENST00000261889 LMTK3Q96Q04 1460 aa16.24■□□□□ 0.19
SNX1-201ENST00000261889 STRCQ7RTU9 1775 aa16.24■□□□□ 0.19
SNX1-201ENST00000261889 TBC1D9Q6ZT07 1266 aa16.23■□□□□ 0.19
SNX1-201ENST00000261889 RBM27Q9P2N5 1060 aaKnown RBP16.23■□□□□ 0.19
SNX1-201ENST00000261889 AK9Q5TCS8 1911 aa16.23■□□□□ 0.19
SNX1-201ENST00000261889 MCTP1Q6DN14 999 aa16.23■□□□□ 0.19
SNX1-201ENST00000261889 ZBTB40Q9NUA8 1239 aa16.23■□□□□ 0.19
SNX1-201ENST00000261889 RIMS2Q9UQ26 1411 aa16.23■□□□□ 0.19
SNX1-201ENST00000261889 NUTM2FA1L443 756 aa16.23■□□□□ 0.19
SNX1-201ENST00000261889 MRE11P49959 708 aa16.22■□□□□ 0.19
SNX1-201ENST00000261889 DDX49Q9Y6V7 483 aaKnown RBP16.22■□□□□ 0.19
SNX1-201ENST00000261889 PHF23Q9BUL5 403 aaPredicted RBP16.21■□□□□ 0.19
SNX1-201ENST00000261889 CAVIN1Q6NZI2 390 aaKnown RBP16.21■□□□□ 0.19
SNX1-201ENST00000261889 KIF2CQ99661 725 aa16.21■□□□□ 0.19
SNX1-201ENST00000261889 NCKAP5LQ9HCH0 1330 aa16.21■□□□□ 0.19
SNX1-201ENST00000261889 XRN1Q8IZH2 1706 aaKnown RBP16.21■□□□□ 0.18
SNX1-201ENST00000261889 RNF214Q8ND24 703 aa16.2■□□□□ 0.18
SNX1-201ENST00000261889 ZMYND15Q9H091 742 aa16.2■□□□□ 0.18
SNX1-201ENST00000261889 ESF1Q9H501 851 aaKnown RBP16.2■□□□□ 0.18
SNX1-201ENST00000261889 CLCN1P35523 988 aa16.2■□□□□ 0.18
SNX1-201ENST00000261889 SIRT2Q8IXJ6 389 aa16.19■□□□□ 0.18
SNX1-201ENST00000261889 SMC5Q8IY18 1101 aa16.19■□□□□ 0.18
SNX1-201ENST00000261889 ADAMTS13Q76LX8 1427 aa16.19■□□□□ 0.18
SNX1-201ENST00000261889 FYB1O15117 783 aa16.19■□□□□ 0.18
SNX1-201ENST00000261889 ZGPATQ8N5A5 531 aaKnown RBP16.19■□□□□ 0.18
SNX1-201ENST00000261889 PRAM1Q96QH2 718 aa16.19■□□□□ 0.18
SNX1-201ENST00000261889 CABP1Q9NZU7 370 aa16.19■□□□□ 0.18
SNX1-201ENST00000261889 NPC1L1Q9UHC9 1359 aa16.19■□□□□ 0.18
SNX1-201ENST00000261889 NUCB1Q02818 461 aa16.18■□□□□ 0.18
SNX1-201ENST00000261889 PLEKHF1Q96S99 279 aa16.18■□□□□ 0.18
SNX1-201ENST00000261889 PLEKHG1Q9ULL1 1385 aa16.18■□□□□ 0.18
SNX1-201ENST00000261889 EMILIN1Q9Y6C2 1016 aa16.18■□□□□ 0.18
SNX1-201ENST00000261889 CHD2O14647 1828 aaKnown RBP16.18■□□□□ 0.18
SNX1-201ENST00000261889 DLC1Q96QB1 1528 aa16.18■□□□□ 0.18
SNX1-201ENST00000261889 DDX11L8A8MPP1 907 aa16.18■□□□□ 0.18
SNX1-201ENST00000261889 A0A1W2PP64 1363 aa16.17■□□□□ 0.18
SNX1-201ENST00000261889 DIAPH1O60610 1272 aaKnown RBP16.17■□□□□ 0.18
SNX1-201ENST00000261889 RRS1Q15050 365 aaKnown RBP16.17■□□□□ 0.18
SNX1-201ENST00000261889 MIS18AQ9NYP9 233 aa16.17■□□□□ 0.18
SNX1-201ENST00000261889 CPS1P31327 1500 aa16.17■□□□□ 0.18
SNX1-201ENST00000261889 NWD1Q149M9 1564 aa16.17■□□□□ 0.18
SNX1-201ENST00000261889 HDAC1Q13547 482 aaPredicted RBP16.16■□□□□ 0.18
SNX1-201ENST00000261889 WAPLQ7Z5K2 1190 aa16.16■□□□□ 0.18
SNX1-201ENST00000261889 C14orf93Q9H972 538 aaKnown RBP16.16■□□□□ 0.18
SNX1-201ENST00000261889 EVC2Q86UK5 1308 aa16.16■□□□□ 0.18
SNX1-201ENST00000261889 JARID2Q92833 1246 aaPredicted RBP16.16■□□□□ 0.18
SNX1-201ENST00000261889 NASPP49321 788 aaPredicted RBP16.15■□□□□ 0.18
SNX1-201ENST00000261889 ZNF428Q96B54 188 aa16.15■□□□□ 0.18
SNX1-201ENST00000261889 XPCQ01831 940 aaPredicted RBP16.15■□□□□ 0.18
SNX1-201ENST00000261889 C8orf58Q8NAV2 365 aa16.15■□□□□ 0.18
SNX1-201ENST00000261889 TECPR2O15040 1411 aa16.15■□□□□ 0.18
SNX1-201ENST00000261889 GSPT1P15170 499 aaKnown RBP16.15■□□□□ 0.18
SNX1-201ENST00000261889 KIAA1211Q6ZU35 1233 aa16.15■□□□□ 0.18
SNX1-201ENST00000261889 PKNOX2Q96KN3 472 aa16.15■□□□□ 0.18
SNX1-201ENST00000261889 GBP4Q96PP9 640 aa16.15■□□□□ 0.18
SNX1-201ENST00000261889 NINLQ9Y2I6 1382 aa16.15■□□□□ 0.18
SNX1-201ENST00000261889 NECTIN2Q92692 538 aa16.14■□□□□ 0.17
SNX1-201ENST00000261889 IQSEC2Q5JU85 1478 aa16.14■□□□□ 0.17
SNX1-201ENST00000261889 K7ELQ4 463 aaPredicted RBP16.14■□□□□ 0.17
SNX1-201ENST00000261889 PRPF40AO75400 957 aaKnown RBP16.13■□□□□ 0.17
SNX1-201ENST00000261889 FAM13BQ9NYF5 915 aa16.13■□□□□ 0.17
SNX1-201ENST00000261889 SLC24A1O60721 1099 aa16.13■□□□□ 0.17
SNX1-201ENST00000261889 NSFL1CQ9UNZ2 370 aaKnown RBP16.13■□□□□ 0.17
SNX1-201ENST00000261889 QRICH2Q9H0J4 1663 aa16.13■□□□□ 0.17
SNX1-201ENST00000261889 RAB3GAP1Q15042 981 aa16.13■□□□□ 0.17
SNX1-201ENST00000261889 LARP6Q9BRS8 491 aaKnown RBP16.13■□□□□ 0.17
SNX1-201ENST00000261889 SHPRHQ149N8 1683 aa16.12■□□□□ 0.17
SNX1-201ENST00000261889 GDPD2Q9HCC8 539 aa16.12■□□□□ 0.17
SNX1-201ENST00000261889 R3HCC1Q9Y3T6 440 aaKnown RBP16.12■□□□□ 0.17
SNX1-201ENST00000261889 PLEKHG5O94827 1062 aa16.12■□□□□ 0.17
SNX1-201ENST00000261889 PPIP5K1Q6PFW1 1433 aa16.12■□□□□ 0.17
SNX1-201ENST00000261889 ZBTB7BO15156 539 aaPredicted RBP16.12■□□□□ 0.17
SNX1-201ENST00000261889 VGFO15240 615 aaPredicted RBP16.11■□□□□ 0.17
SNX1-201ENST00000261889 BAG4O95429 457 aaKnown RBP16.11■□□□□ 0.17
SNX1-201ENST00000261889 IPO8O15397 1037 aaKnown RBP16.11■□□□□ 0.17
SNX1-201ENST00000261889 LTKP29376 864 aa16.11■□□□□ 0.17
SNX1-201ENST00000261889 SLC4A10Q6U841 1118 aa16.11■□□□□ 0.17
SNX1-201ENST00000261889 MBIPQ9NS73 344 aa16.11■□□□□ 0.17
SNX1-201ENST00000261889 VIRMAQ69YN4 1812 aaKnown RBP16.11■□□□□ 0.17
SNX1-201ENST00000261889 STRCP1A6NGW2 1772 aa16.11■□□□□ 0.17
SNX1-201ENST00000261889 CCDC27Q2M243 656 aa16.1■□□□□ 0.17
SNX1-201ENST00000261889 RBM25P49756 843 aaKnown RBP16.1■□□□□ 0.17
SNX1-201ENST00000261889 ADGRB2O60241 1585 aa16.1■□□□□ 0.17
SNX1-201ENST00000261889 NGEFQ8N5V2 710 aa16.09■□□□□ 0.17
SNX1-201ENST00000261889 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.09■□□□□ 0.17
SNX1-201ENST00000261889 TSC1Q92574 1164 aa16.09■□□□□ 0.17
SNX1-201ENST00000261889 FAM177BA6PVY3 158 aa16.09■□□□□ 0.17
SNX1-201ENST00000261889 DDIT3P35638 169 aa16.09■□□□□ 0.17
SNX1-201ENST00000261889 NME9Q86XW9 330 aa16.09■□□□□ 0.17
SNX1-201ENST00000261889 BCL11BQ9C0K0 894 aaPredicted RBP16.09■□□□□ 0.17
SNX1-201ENST00000261889 PRIM1P49642 420 aaKnown RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 1687.4 ms