RNA–Protein interactions for RNA: ENST00000261799.8

PDGFRB-201, Transcript of platelet derived growth factor receptor beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRB, Length 5,717 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-201ENST00000261799 BICD2Q8TD16 824 aa16.3■□□□□ 0.2
PDGFRB-201ENST00000261799 CAVIN4Q5BKX8 364 aa16.3■□□□□ 0.2
PDGFRB-201ENST00000261799 ST5P78524 1137 aa16.29■□□□□ 0.2
PDGFRB-201ENST00000261799 TCP11L2Q8N4U5 519 aa16.29■□□□□ 0.2
PDGFRB-201ENST00000261799 PPP2R1AP30153 589 aa16.29■□□□□ 0.2
PDGFRB-201ENST00000261799 ZBED9Q6R2W3 1325 aa16.28■□□□□ 0.2
PDGFRB-201ENST00000261799 FOXO3O43524 673 aa16.28■□□□□ 0.2
PDGFRB-201ENST00000261799 C8orf37Q96NL8 207 aa16.28■□□□□ 0.2
PDGFRB-201ENST00000261799 TXLNAP40222 546 aa16.28■□□□□ 0.2
PDGFRB-201ENST00000261799 RFC4P35249 363 aa16.27■□□□□ 0.2
PDGFRB-201ENST00000261799 WAPLQ7Z5K2 1190 aa16.27■□□□□ 0.2
PDGFRB-201ENST00000261799 CRACR2BQ8N4Y2 399 aaPredicted RBP16.27■□□□□ 0.2
PDGFRB-201ENST00000261799 ZNF287Q9HBT7 754 aa16.27■□□□□ 0.2
PDGFRB-201ENST00000261799 CCDC69A6NI79 296 aa16.27■□□□□ 0.2
PDGFRB-201ENST00000261799 SIL1Q9H173 461 aa16.27■□□□□ 0.2
PDGFRB-201ENST00000261799 ZNF219Q9P2Y4 722 aaPredicted RBP16.27■□□□□ 0.2
PDGFRB-201ENST00000261799 CAMSAP2Q08AD1 1489 aa16.27■□□□□ 0.2
PDGFRB-201ENST00000261799 SLF2Q8IX21 1173 aa16.27■□□□□ 0.19
PDGFRB-201ENST00000261799 LMTK3Q96Q04 1460 aa16.27■□□□□ 0.19
PDGFRB-201ENST00000261799 VPS37CA5D8V6 355 aaPredicted RBP16.27■□□□□ 0.19
PDGFRB-201ENST00000261799 FOXD4L6Q3SYB3 417 aaPredicted RBP16.26■□□□□ 0.19
PDGFRB-201ENST00000261799 FOXD4L3Q6VB84 417 aaPredicted RBP16.26■□□□□ 0.19
PDGFRB-201ENST00000261799 LRP2BPQ9P2M1 347 aa16.26■□□□□ 0.19
PDGFRB-201ENST00000261799 KDM4AO75164 1064 aa16.26■□□□□ 0.19
PDGFRB-201ENST00000261799 FBXO31Q5XUX0 539 aaPredicted RBP16.26■□□□□ 0.19
PDGFRB-201ENST00000261799 CEP126Q9P2H0 1117 aa16.26■□□□□ 0.19
PDGFRB-201ENST00000261799 TEX13AQ9BXU3 409 aaPredicted RBP16.26■□□□□ 0.19
PDGFRB-201ENST00000261799 PTCD1O75127 700 aaKnown RBP16.26■□□□□ 0.19
PDGFRB-201ENST00000261799 CDC45O75419 566 aa16.26■□□□□ 0.19
PDGFRB-201ENST00000261799 BRD4O60885 1362 aaPredicted RBP16.25■□□□□ 0.19
PDGFRB-201ENST00000261799 GOLGA6L3A6NEY3 463 aa16.25■□□□□ 0.19
PDGFRB-201ENST00000261799 CCDC73Q6ZRK6 1079 aa16.25■□□□□ 0.19
PDGFRB-201ENST00000261799 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.25■□□□□ 0.19
PDGFRB-201ENST00000261799 NBPF1Q3BBV0 1214 aa16.25■□□□□ 0.19
PDGFRB-201ENST00000261799 ZNF622Q969S3 477 aaKnown RBP eCLIP16.24■□□□□ 0.19
PDGFRB-201ENST00000261799 ARAP1Q96P48 1450 aa16.24■□□□□ 0.19
PDGFRB-201ENST00000261799 ZNF76P36508 570 aa16.23■□□□□ 0.19
PDGFRB-201ENST00000261799 TDO2P48775 406 aa16.23■□□□□ 0.19
PDGFRB-201ENST00000261799 EXOSC9Q06265 439 aaKnown RBP16.23■□□□□ 0.19
PDGFRB-201ENST00000261799 FKBP4Q02790 459 aaKnown RBP eCLIP16.23■□□□□ 0.19
PDGFRB-201ENST00000261799 OLFM4Q6UX06 510 aa16.23■□□□□ 0.19
PDGFRB-201ENST00000261799 STK11IPQ8N1F8 1099 aa16.23■□□□□ 0.19
PDGFRB-201ENST00000261799 AKAP2Q9Y2D5 859 aa16.23■□□□□ 0.19
PDGFRB-201ENST00000261799 ZFYVE27Q5T4F4 411 aa16.23■□□□□ 0.19
PDGFRB-201ENST00000261799 METTL24Q5JXM2 366 aa16.23■□□□□ 0.19
PDGFRB-201ENST00000261799 USP5P45974 858 aa16.22■□□□□ 0.19
PDGFRB-201ENST00000261799 EXOC6Q8TAG9 804 aa16.22■□□□□ 0.19
PDGFRB-201ENST00000261799 IFIT1P09914 478 aaKnown RBP16.22■□□□□ 0.19
PDGFRB-201ENST00000261799 LNPKQ9C0E8 428 aa16.22■□□□□ 0.19
PDGFRB-201ENST00000261799 TRIM21P19474 475 aaKnown RBP16.22■□□□□ 0.19
PDGFRB-201ENST00000261799 RDXP35241 583 aaKnown RBP16.22■□□□□ 0.19
PDGFRB-201ENST00000261799 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.22■□□□□ 0.19
PDGFRB-201ENST00000261799 WASLO00401 505 aaPredicted RBP16.22■□□□□ 0.19
PDGFRB-201ENST00000261799 SKOR2Q2VWA4 1001 aaPredicted RBP16.22■□□□□ 0.19
PDGFRB-201ENST00000261799 TRIM22Q8IYM9 498 aa16.22■□□□□ 0.19
PDGFRB-201ENST00000261799 TNIP1Q15025 636 aa16.22■□□□□ 0.19
PDGFRB-201ENST00000261799 NPHP3Q7Z494 1330 aa16.21■□□□□ 0.19
PDGFRB-201ENST00000261799 MYO1BO43795 1136 aa16.21■□□□□ 0.19
PDGFRB-201ENST00000261799 POLR3DP05423 398 aaPredicted RBP16.21■□□□□ 0.19
PDGFRB-201ENST00000261799 ADAMTS8Q9UP79 889 aa16.21■□□□□ 0.19
PDGFRB-201ENST00000261799 CLEC11AQ9Y240 323 aa16.21■□□□□ 0.18
PDGFRB-201ENST00000261799 TIAM1Q13009 1591 aa16.21■□□□□ 0.18
PDGFRB-201ENST00000261799 FCHSD2O94868 740 aa16.2■□□□□ 0.18
PDGFRB-201ENST00000261799 NAP1L1P55209 391 aaKnown RBP16.2■□□□□ 0.18
PDGFRB-201ENST00000261799 DNAI2Q9GZS0 605 aa16.2■□□□□ 0.18
PDGFRB-201ENST00000261799 OFD1O75665 1012 aa16.2■□□□□ 0.18
PDGFRB-201ENST00000261799 SYCP1Q15431 976 aa16.2■□□□□ 0.18
PDGFRB-201ENST00000261799 DZIP1Q86YF9 867 aaKnown RBP16.2■□□□□ 0.18
PDGFRB-201ENST00000261799 TMEM87AQ8NBN3 555 aa16.2■□□□□ 0.18
PDGFRB-201ENST00000261799 TRMT112Q9UI30 125 aaKnown RBP16.2■□□□□ 0.18
PDGFRB-201ENST00000261799 ASXL2Q76L83 1435 aa16.2■□□□□ 0.18
PDGFRB-201ENST00000261799 PRXQ9BXM0 1461 aa16.2■□□□□ 0.18
PDGFRB-201ENST00000261799 SPDYE4A6NLX3 237 aa16.19■□□□□ 0.18
PDGFRB-201ENST00000261799 NSD3Q9BZ95 1437 aa16.19■□□□□ 0.18
PDGFRB-201ENST00000261799 MATR3P43243 847 aaKnown RBP eCLIP16.19■□□□□ 0.18
PDGFRB-201ENST00000261799 SASS6Q6UVJ0 657 aa16.19■□□□□ 0.18
PDGFRB-201ENST00000261799 UBAC1Q9BSL1 405 aa16.19■□□□□ 0.18
PDGFRB-201ENST00000261799 LRRCC1Q9C099 1032 aa16.19■□□□□ 0.18
PDGFRB-201ENST00000261799 ZNF428Q96B54 188 aa16.19■□□□□ 0.18
PDGFRB-201ENST00000261799 FMNL2Q96PY5 1086 aa16.19■□□□□ 0.18
PDGFRB-201ENST00000261799 SPINK5Q9NQ38 1064 aaPredicted RBP16.19■□□□□ 0.18
PDGFRB-201ENST00000261799 SLC5A1P13866 664 aa16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 LARP1Q6PKG0 1096 aaKnown RBP16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 DDX46Q7L014 1031 aaKnown RBP16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 USHBP1Q8N6Y0 703 aa16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 NOB1Q9ULX3 412 aaKnown RBP16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 PPP1R42Q7Z4L9 355 aa16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 AACSQ86V21 672 aa16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 NUP133Q8WUM0 1156 aa16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 URB2Q14146 1524 aaKnown RBP16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 C6orf229H3BNL8 230 aa16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 CCDC85AQ96PX6 553 aaPredicted RBP16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 IFNL2Q8IZJ0 200 aa16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 CTNNA3Q9UI47 895 aa16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 SMARCC1Q92922 1105 aaPredicted RBP16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 DDX49Q9Y6V7 483 aaKnown RBP16.18■□□□□ 0.18
PDGFRB-201ENST00000261799 MYCNP04198 464 aaPredicted RBP16.17■□□□□ 0.18
PDGFRB-201ENST00000261799 WDR78Q5VTH9 848 aa16.17■□□□□ 0.18
PDGFRB-201ENST00000261799 PANK1Q8TE04 598 aa16.17■□□□□ 0.18
PDGFRB-201ENST00000261799 SCLT1Q96NL6 688 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms