RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 SLC10A4Q96EP9 437 aa8.58□□□□□ -1.04
CCDC54-201ENST00000261058 CDK15Q96Q40 435 aa8.58□□□□□ -1.04
CCDC54-201ENST00000261058 SIAH2O43255 324 aa8.57□□□□□ -1.04
CCDC54-201ENST00000261058 SPRYD7Q5W111 196 aa8.57□□□□□ -1.04
CCDC54-201ENST00000261058 PBXIP1Q96AQ6 731 aa8.57□□□□□ -1.04
CCDC54-201ENST00000261058 WNT7AO00755 349 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 NBPF20Q3BBV1 942 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 SLFNL1Q499Z3 407 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 TRAF7Q6Q0C0 670 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 Q6ZNB5 142 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 SEPT12Q8IYM1 358 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 GIGYF1O75420 1035 aaPredicted RBP8.55□□□□□ -1.04
CCDC54-201ENST00000261058 RNF135Q8IUD6 432 aa8.55□□□□□ -1.04
CCDC54-201ENST00000261058 V9GY48 417 aaPredicted RBP8.55□□□□□ -1.04
CCDC54-201ENST00000261058 USP17L5A8MUK1 530 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 LZTS3O60299 673 aaPredicted RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 LMOD1P29536 600 aaPredicted RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 MAP7D1Q3KQU3 841 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 CCDC125Q86Z20 511 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 EHBP1Q8NDI1 1231 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 USP17L3A6NCW0 530 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 USP17L4A6NCW7 530 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 SKIP12755 728 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 KANK4Q5T7N3 995 aaPredicted RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 USP17L2Q6R6M4 530 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 USP17L1Q7RTZ2 530 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 ZNF598Q86UK7 904 aaKnown RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 PLPP7Q8NBV4 271 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 CCDC85AQ96PX6 553 aaPredicted RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 GRM5P41594 1212 aa8.53□□□□□ -1.04
CCDC54-201ENST00000261058 TSGA10IPQ3SY00 556 aa8.53□□□□□ -1.04
CCDC54-201ENST00000261058 RNF20Q5VTR2 975 aa8.53□□□□□ -1.04
CCDC54-201ENST00000261058 KCTD15Q96SI1 283 aaPredicted RBP8.53□□□□□ -1.04
CCDC54-201ENST00000261058 RFX1P22670 979 aa8.52□□□□□ -1.05
CCDC54-201ENST00000261058 MRGPRX2Q96LB1 330 aa8.52□□□□□ -1.05
CCDC54-201ENST00000261058 PKD2L1Q9P0L9 805 aa8.52□□□□□ -1.05
CCDC54-201ENST00000261058 INTS6LQ5JSJ4 861 aaKnown RBP8.51□□□□□ -1.05
CCDC54-201ENST00000261058 ZNF697Q5TEC3 545 aa8.51□□□□□ -1.05
CCDC54-201ENST00000261058 PRKD2Q9BZL6 878 aa8.51□□□□□ -1.05
CCDC54-201ENST00000261058 ATG7O95352 703 aa8.5□□□□□ -1.05
CCDC54-201ENST00000261058 NCOA4Q13772 614 aa8.5□□□□□ -1.05
CCDC54-201ENST00000261058 VASH1Q7L8A9 365 aaPredicted RBP8.5□□□□□ -1.05
CCDC54-201ENST00000261058 TLL2Q9Y6L7 1015 aa8.5□□□□□ -1.05
CCDC54-201ENST00000261058 ADH1CP00326 375 aa8.49□□□□□ -1.05
CCDC54-201ENST00000261058 DOLKQ9UPQ8 538 aa8.49□□□□□ -1.05
CCDC54-201ENST00000261058 ELOAQ14241 798 aaKnown RBP8.48□□□□□ -1.05
CCDC54-201ENST00000261058 DEPDC4Q8N2C3 294 aa8.48□□□□□ -1.05
CCDC54-201ENST00000261058 VRTNQ9H8Y1 702 aa8.48□□□□□ -1.05
CCDC54-201ENST00000261058 GDF9O60383 454 aa8.47□□□□□ -1.05
CCDC54-201ENST00000261058 CDCA7Q9BWT1 371 aaPredicted RBP8.47□□□□□ -1.05
CCDC54-201ENST00000261058 MKRN1Q9UHC7 482 aaKnown RBP8.47□□□□□ -1.05
CCDC54-201ENST00000261058 FAM196BA6NMK8 535 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 ATP5J2-PTCD1G3V325 749 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 ERVH48-1M5A8F1 160 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 GFRA3O60609 400 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 FSHRP23945 695 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 NR5A1Q13285 461 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 EML3Q32P44 896 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 RETREG2Q8NC44 543 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 NRG2O14511 850 aaPredicted RBP8.46□□□□□ -1.06
CCDC54-201ENST00000261058 TRIM67Q6ZTA4 783 aa8.46□□□□□ -1.06
CCDC54-201ENST00000261058 PCDHB11Q9Y5F2 797 aa8.46□□□□□ -1.06
CCDC54-201ENST00000261058 ERVK-9P63128 1117 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PRR20EP86478 221 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PRR20CP86479 221 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PRR20DP86480 221 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PRR20BP86481 221 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PRR20AP86496 221 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PTK7Q13308 1070 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 ARID5BQ14865 1188 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 CRTC2Q53ET0 693 aaPredicted RBP8.45□□□□□ -1.06
CCDC54-201ENST00000261058 ACIN1Q9UKV3 1341 aaKnown RBP8.45□□□□□ -1.06
CCDC54-201ENST00000261058 DKK1O94907 266 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 NR3C2P08235 984 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 CLDN10P78369 228 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 DHX9Q08211 1270 aaKnown RBP8.44□□□□□ -1.06
CCDC54-201ENST00000261058 SNIP1Q8TAD8 396 aaKnown RBP8.44□□□□□ -1.06
CCDC54-201ENST00000261058 TOR4AQ9NXH8 423 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 ZMIZ1Q9ULJ6 1067 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 NOD1Q9Y239 953 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 USTQ9Y2C2 406 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L15C9J2P7 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L10C9JJH3 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L13C9JLJ4 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L12C9JPN9 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L11C9JVI0 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L21D6R901 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L18D6R9N7 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L22D6RA61 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L17D6RBQ6 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L19D6RCP7 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L20D6RJB6 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L24Q0WX57 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP4Q13107 963 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 CDCA8Q53HL2 280 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 OXLD1Q5BKU9 147 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 CCDC116Q8IYX3 515 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 SIRT1Q96EB6 747 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 TRAIPQ9BWF2 469 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms