RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 SLC10A4Q96EP9 437 aa8.58□□□□□ -1.04
CCDC54-201ENST00000261058 CDK15Q96Q40 435 aa8.58□□□□□ -1.04
CCDC54-201ENST00000261058 SIAH2O43255 324 aa8.57□□□□□ -1.04
CCDC54-201ENST00000261058 SPRYD7Q5W111 196 aa8.57□□□□□ -1.04
CCDC54-201ENST00000261058 PBXIP1Q96AQ6 731 aa8.57□□□□□ -1.04
CCDC54-201ENST00000261058 WNT7AO00755 349 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 NBPF20Q3BBV1 942 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 SLFNL1Q499Z3 407 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 TRAF7Q6Q0C0 670 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 Q6ZNB5 142 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 SEPT12Q8IYM1 358 aa8.56□□□□□ -1.04
CCDC54-201ENST00000261058 GIGYF1O75420 1035 aaPredicted RBP8.55□□□□□ -1.04
CCDC54-201ENST00000261058 RNF135Q8IUD6 432 aa8.55□□□□□ -1.04
CCDC54-201ENST00000261058 V9GY48 417 aaPredicted RBP8.55□□□□□ -1.04
CCDC54-201ENST00000261058 USP17L5A8MUK1 530 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 LZTS3O60299 673 aaPredicted RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 LMOD1P29536 600 aaPredicted RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 MAP7D1Q3KQU3 841 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 CCDC125Q86Z20 511 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 EHBP1Q8NDI1 1231 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 USP17L3A6NCW0 530 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 USP17L4A6NCW7 530 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 SKIP12755 728 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 KANK4Q5T7N3 995 aaPredicted RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 USP17L2Q6R6M4 530 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 USP17L1Q7RTZ2 530 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 ZNF598Q86UK7 904 aaKnown RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 PLPP7Q8NBV4 271 aa8.54□□□□□ -1.04
CCDC54-201ENST00000261058 CCDC85AQ96PX6 553 aaPredicted RBP8.54□□□□□ -1.04
CCDC54-201ENST00000261058 GRM5P41594 1212 aa8.53□□□□□ -1.04
CCDC54-201ENST00000261058 TSGA10IPQ3SY00 556 aa8.53□□□□□ -1.04
CCDC54-201ENST00000261058 RNF20Q5VTR2 975 aa8.53□□□□□ -1.04
CCDC54-201ENST00000261058 KCTD15Q96SI1 283 aaPredicted RBP8.53□□□□□ -1.04
CCDC54-201ENST00000261058 RFX1P22670 979 aa8.52□□□□□ -1.05
CCDC54-201ENST00000261058 MRGPRX2Q96LB1 330 aa8.52□□□□□ -1.05
CCDC54-201ENST00000261058 PKD2L1Q9P0L9 805 aa8.52□□□□□ -1.05
CCDC54-201ENST00000261058 INTS6LQ5JSJ4 861 aaKnown RBP8.51□□□□□ -1.05
CCDC54-201ENST00000261058 ZNF697Q5TEC3 545 aa8.51□□□□□ -1.05
CCDC54-201ENST00000261058 PRKD2Q9BZL6 878 aa8.51□□□□□ -1.05
CCDC54-201ENST00000261058 ATG7O95352 703 aa8.5□□□□□ -1.05
CCDC54-201ENST00000261058 NCOA4Q13772 614 aa8.5□□□□□ -1.05
CCDC54-201ENST00000261058 VASH1Q7L8A9 365 aaPredicted RBP8.5□□□□□ -1.05
CCDC54-201ENST00000261058 TLL2Q9Y6L7 1015 aa8.5□□□□□ -1.05
CCDC54-201ENST00000261058 ADH1CP00326 375 aa8.49□□□□□ -1.05
CCDC54-201ENST00000261058 DOLKQ9UPQ8 538 aa8.49□□□□□ -1.05
CCDC54-201ENST00000261058 ELOAQ14241 798 aaKnown RBP8.48□□□□□ -1.05
CCDC54-201ENST00000261058 DEPDC4Q8N2C3 294 aa8.48□□□□□ -1.05
CCDC54-201ENST00000261058 VRTNQ9H8Y1 702 aa8.48□□□□□ -1.05
CCDC54-201ENST00000261058 GDF9O60383 454 aa8.47□□□□□ -1.05
CCDC54-201ENST00000261058 CDCA7Q9BWT1 371 aaPredicted RBP8.47□□□□□ -1.05
CCDC54-201ENST00000261058 MKRN1Q9UHC7 482 aaKnown RBP8.47□□□□□ -1.05
CCDC54-201ENST00000261058 FAM196BA6NMK8 535 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 ATP5J2-PTCD1G3V325 749 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 ERVH48-1M5A8F1 160 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 GFRA3O60609 400 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 FSHRP23945 695 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 NR5A1Q13285 461 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 EML3Q32P44 896 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 RETREG2Q8NC44 543 aa8.46□□□□□ -1.05
CCDC54-201ENST00000261058 NRG2O14511 850 aaPredicted RBP8.46□□□□□ -1.06
CCDC54-201ENST00000261058 TRIM67Q6ZTA4 783 aa8.46□□□□□ -1.06
CCDC54-201ENST00000261058 PCDHB11Q9Y5F2 797 aa8.46□□□□□ -1.06
CCDC54-201ENST00000261058 ERVK-9P63128 1117 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PRR20EP86478 221 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PRR20CP86479 221 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PRR20DP86480 221 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PRR20BP86481 221 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PRR20AP86496 221 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 PTK7Q13308 1070 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 ARID5BQ14865 1188 aa8.45□□□□□ -1.06
CCDC54-201ENST00000261058 CRTC2Q53ET0 693 aaPredicted RBP8.45□□□□□ -1.06
CCDC54-201ENST00000261058 ACIN1Q9UKV3 1341 aaKnown RBP8.45□□□□□ -1.06
CCDC54-201ENST00000261058 DKK1O94907 266 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 NR3C2P08235 984 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 CLDN10P78369 228 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 DHX9Q08211 1270 aaKnown RBP8.44□□□□□ -1.06
CCDC54-201ENST00000261058 SNIP1Q8TAD8 396 aaKnown RBP8.44□□□□□ -1.06
CCDC54-201ENST00000261058 TOR4AQ9NXH8 423 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 ZMIZ1Q9ULJ6 1067 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 NOD1Q9Y239 953 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 USTQ9Y2C2 406 aa8.44□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L15C9J2P7 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L10C9JJH3 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L13C9JLJ4 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L12C9JPN9 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L11C9JVI0 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L21D6R901 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L18D6R9N7 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L22D6RA61 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L17D6RBQ6 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L19D6RCP7 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L20D6RJB6 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP17L24Q0WX57 530 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 USP4Q13107 963 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 CDCA8Q53HL2 280 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 OXLD1Q5BKU9 147 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 CCDC116Q8IYX3 515 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 SIRT1Q96EB6 747 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 TRAIPQ9BWF2 469 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms