RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 TRIM26Q12899 539 aaPredicted RBP29.81■■■□□ 2.36
NEDD8-201ENST00000250495 DDB1Q16531 1140 aa29.8■■■□□ 2.36
NEDD8-201ENST00000250495 HDGFL2Q7Z4V5 671 aaPredicted RBP29.8■■■□□ 2.36
NEDD8-201ENST00000250495 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.8■■■□□ 2.36
NEDD8-201ENST00000250495 R3HDM1Q15032 1099 aaKnown RBP29.79■■■□□ 2.36
NEDD8-201ENST00000250495 PUS7Q96PZ0 661 aaKnown RBP29.79■■■□□ 2.36
NEDD8-201ENST00000250495 CDCA7Q9BWT1 371 aaPredicted RBP29.79■■■□□ 2.36
NEDD8-201ENST00000250495 CSB-PGBD3P0DP91 1061 aa29.78■■■□□ 2.36
NEDD8-201ENST00000250495 SLC12A5Q9H2X9 1139 aa29.77■■■□□ 2.36
NEDD8-201ENST00000250495 USP31Q70CQ4 1352 aa29.77■■■□□ 2.36
NEDD8-201ENST00000250495 MON2Q7Z3U7 1717 aa29.76■■■□□ 2.36
NEDD8-201ENST00000250495 CARD10Q9BWT7 1032 aa29.76■■■□□ 2.35
NEDD8-201ENST00000250495 SLC24A1O60721 1099 aa29.75■■■□□ 2.35
NEDD8-201ENST00000250495 TERF2IPQ9NYB0 399 aa29.75■■■□□ 2.35
NEDD8-201ENST00000250495 LRP5O75197 1615 aa29.74■■■□□ 2.35
NEDD8-201ENST00000250495 OVOS2A0A0G2JMS6 1433 aa29.74■■■□□ 2.35
NEDD8-201ENST00000250495 OVOS2A0A0J9YW53 1432 aa29.74■■■□□ 2.35
NEDD8-201ENST00000250495 OVOS2Q6IE36 1432 aa29.74■■■□□ 2.35
NEDD8-201ENST00000250495 CD163L1Q9NR16 1453 aa29.74■■■□□ 2.35
NEDD8-201ENST00000250495 RGPD5Q99666 1765 aa29.72■■■□□ 2.35
NEDD8-201ENST00000250495 NFAT5O94916 1531 aa29.72■■■□□ 2.35
NEDD8-201ENST00000250495 NBPF14Q5TI25 921 aa29.72■■■□□ 2.35
NEDD8-201ENST00000250495 NME9Q86XW9 330 aa29.72■■■□□ 2.35
NEDD8-201ENST00000250495 ST20-MTHFSA0A0A6YYL1 179 aa29.69■■■□□ 2.34
NEDD8-201ENST00000250495 ABCC6O95255 1503 aa29.68■■■□□ 2.34
NEDD8-201ENST00000250495 EDC4Q6P2E9 1401 aaKnown RBP29.68■■■□□ 2.34
NEDD8-201ENST00000250495 LRRC37A3O60309 1634 aa29.67■■■□□ 2.34
NEDD8-201ENST00000250495 CCDC7Q96M83 1385 aa29.67■■■□□ 2.34
NEDD8-201ENST00000250495 EXOC5O00471 708 aa29.67■■■□□ 2.34
NEDD8-201ENST00000250495 TESK2Q96S53 571 aa29.67■■■□□ 2.34
NEDD8-201ENST00000250495 PEAK1Q9H792 1746 aa29.66■■■□□ 2.34
NEDD8-201ENST00000250495 MARCH10Q8NA82 808 aaPredicted RBP29.66■■■□□ 2.34
NEDD8-201ENST00000250495 PLSCR1O15162 318 aa29.65■■■□□ 2.34
NEDD8-201ENST00000250495 BCL11BQ9C0K0 894 aaPredicted RBP29.65■■■□□ 2.34
NEDD8-201ENST00000250495 USP54Q70EL1 1684 aa29.65■■■□□ 2.34
NEDD8-201ENST00000250495 A0A1W2PP64 1363 aa29.64■■■□□ 2.34
NEDD8-201ENST00000250495 RREB1Q92766 1687 aa29.64■■■□□ 2.34
NEDD8-201ENST00000250495 WNK3Q9BYP7 1800 aa29.64■■■□□ 2.33
NEDD8-201ENST00000250495 NINLQ9Y2I6 1382 aa29.64■■■□□ 2.33
NEDD8-201ENST00000250495 SBF2Q86WG5 1849 aa29.62■■■□□ 2.33
NEDD8-201ENST00000250495 BCL9O00512 1426 aa29.62■■■□□ 2.33
NEDD8-201ENST00000250495 NLRP2Q9NX02 1062 aa29.61■■■□□ 2.33
NEDD8-201ENST00000250495 ERBB3P21860 1342 aa29.61■■■□□ 2.33
NEDD8-201ENST00000250495 NUP188Q5SRE5 1749 aa29.59■■■□□ 2.33
NEDD8-201ENST00000250495 LTN1O94822 1766 aa29.57■■■□□ 2.32
NEDD8-201ENST00000250495 ANKRD24Q8TF21 1146 aa29.57■■■□□ 2.32
NEDD8-201ENST00000250495 PTF1AQ7RTS3 328 aa29.55■■■□□ 2.32
NEDD8-201ENST00000250495 IL2RBP14784 551 aa29.54■■■□□ 2.32
NEDD8-201ENST00000250495 TMF1P82094 1093 aa29.54■■■□□ 2.32
NEDD8-201ENST00000250495 COG3Q96JB2 828 aa29.54■■■□□ 2.32
NEDD8-201ENST00000250495 RGPD3A6NKT7 1758 aaPredicted RBP29.54■■■□□ 2.32
NEDD8-201ENST00000250495 RGPD4Q7Z3J3 1758 aa29.54■■■□□ 2.32
NEDD8-201ENST00000250495 IP6K1Q92551 441 aa29.53■■■□□ 2.32
NEDD8-201ENST00000250495 TNS2Q63HR2 1409 aa29.52■■■□□ 2.32
NEDD8-201ENST00000250495 USP47Q96K76 1375 aa29.5■■■□□ 2.31
NEDD8-201ENST00000250495 ANKRD36BQ8N2N9 1353 aa29.49■■■□□ 2.31
NEDD8-201ENST00000250495 PROM2Q8N271 834 aa29.48■■■□□ 2.31
NEDD8-201ENST00000250495 CDCA8Q53HL2 280 aa29.47■■■□□ 2.31
NEDD8-201ENST00000250495 SPON1Q9HCB6 807 aa29.47■■■□□ 2.31
NEDD8-201ENST00000250495 TIMELESSQ9UNS1 1208 aa29.47■■■□□ 2.31
NEDD8-201ENST00000250495 KCNQ2O43526 872 aa29.45■■■□□ 2.31
NEDD8-201ENST00000250495 AMPHP49418 695 aa29.45■■■□□ 2.31
NEDD8-201ENST00000250495 LTV1Q96GA3 475 aaPredicted RBP29.45■■■□□ 2.31
NEDD8-201ENST00000250495 TXNRD1Q16881 649 aa29.44■■■□□ 2.3
NEDD8-201ENST00000250495 MAP3K19Q56UN5 1328 aa29.43■■■□□ 2.3
NEDD8-201ENST00000250495 ACSBG1Q96GR2 724 aa29.42■■■□□ 2.3
NEDD8-201ENST00000250495 ANO8Q9HCE9 1232 aaPredicted RBP29.42■■■□□ 2.3
NEDD8-201ENST00000250495 HOXC9P31274 260 aa29.41■■■□□ 2.3
NEDD8-201ENST00000250495 KAT6BQ8WYB5 2073 aa29.4■■■□□ 2.3
NEDD8-201ENST00000250495 FYB1O15117 783 aa29.4■■■□□ 2.3
NEDD8-201ENST00000250495 FBLN1P23142 703 aa29.4■■■□□ 2.3
NEDD8-201ENST00000250495 STK32BQ9NY57 414 aa29.39■■■□□ 2.3
NEDD8-201ENST00000250495 PPP1R1BQ9UD71 204 aaPredicted RBP29.39■■■□□ 2.3
NEDD8-201ENST00000250495 CLSPNQ9HAW4 1339 aa29.38■■■□□ 2.29
NEDD8-201ENST00000250495 FAM208AQ9UK61 1670 aaKnown RBP29.37■■■□□ 2.29
NEDD8-201ENST00000250495 GGNBP2Q9H3C7 697 aa29.37■■■□□ 2.29
NEDD8-201ENST00000250495 NHSQ6T4R5 1651 aa29.37■■■□□ 2.29
NEDD8-201ENST00000250495 DDX54Q8TDD1 881 aaKnown RBP29.36■■■□□ 2.29
NEDD8-201ENST00000250495 SLC15A2Q16348 729 aa29.35■■■□□ 2.29
NEDD8-201ENST00000250495 PCGF6Q9BYE7 350 aa29.35■■■□□ 2.29
NEDD8-201ENST00000250495 RRS1Q15050 365 aaKnown RBP29.33■■■□□ 2.29
NEDD8-201ENST00000250495 RTL1A6NKG5 1358 aa29.33■■■□□ 2.29
NEDD8-201ENST00000250495 PDGFDQ9GZP0 370 aaPredicted RBP29.29■■■□□ 2.28
NEDD8-201ENST00000250495 ZCRB1Q8TBF4 217 aaKnown RBP29.28■■■□□ 2.28
NEDD8-201ENST00000250495 CASZ1Q86V15 1759 aa29.28■■■□□ 2.28
NEDD8-201ENST00000250495 ZBTB7AO95365 584 aa29.27■■■□□ 2.28
NEDD8-201ENST00000250495 BTAF1O14981 1849 aa29.27■■■□□ 2.28
NEDD8-201ENST00000250495 NBPF6Q5VWK0 638 aa29.26■■■□□ 2.27
NEDD8-201ENST00000250495 NBPF4Q96M43 638 aa29.26■■■□□ 2.27
NEDD8-201ENST00000250495 CARD14Q9BXL6 1004 aa29.25■■■□□ 2.27
NEDD8-201ENST00000250495 SMG6Q86US8 1419 aaKnown RBP29.25■■■□□ 2.27
NEDD8-201ENST00000250495 CGNL1Q0VF96 1302 aa29.24■■■□□ 2.27
NEDD8-201ENST00000250495 RGPD2P0DJD1 1756 aa29.24■■■□□ 2.27
NEDD8-201ENST00000250495 DCAF8L1A6NGE4 600 aa29.24■■■□□ 2.27
NEDD8-201ENST00000250495 ATF5Q9Y2D1 282 aaPredicted RBP29.23■■■□□ 2.27
NEDD8-201ENST00000250495 KIF24Q5T7B8 1368 aa29.23■■■□□ 2.27
NEDD8-201ENST00000250495 KIF20BQ96Q89 1820 aa29.22■■■□□ 2.27
NEDD8-201ENST00000250495 HSP90AB2PQ58FF8 381 aa29.22■■■□□ 2.27
NEDD8-201ENST00000250495 RAPGEF4Q8WZA2 1011 aa29.22■■■□□ 2.27
NEDD8-201ENST00000250495 SYTL4Q96C24 671 aaPredicted RBP29.22■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms