RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 KRT85P78386 507 aa16.12■□□□□ 0.17
SF3A1-201ENST00000215793 RPGRIP1LQ68CZ1 1315 aa16.12■□□□□ 0.17
SF3A1-201ENST00000215793 FAM177BA6PVY3 158 aa16.12■□□□□ 0.17
SF3A1-201ENST00000215793 ZFYVE27Q5T4F4 411 aa16.12■□□□□ 0.17
SF3A1-201ENST00000215793 ATAD2Q6PL18 1390 aa16.11■□□□□ 0.17
SF3A1-201ENST00000215793 PDIA4P13667 645 aaKnown RBP16.11■□□□□ 0.17
SF3A1-201ENST00000215793 DCTN1Q14203 1278 aa16.11■□□□□ 0.17
SF3A1-201ENST00000215793 HSP90AB2PQ58FF8 381 aa16.11■□□□□ 0.17
SF3A1-201ENST00000215793 ZSCAN25Q6NSZ9 544 aa16.11■□□□□ 0.17
SF3A1-201ENST00000215793 CHD1LQ86WJ1 897 aa16.1■□□□□ 0.17
SF3A1-201ENST00000215793 SPG7Q9UQ90 795 aa16.1■□□□□ 0.17
SF3A1-201ENST00000215793 CABP4P57796 275 aa16.1■□□□□ 0.17
SF3A1-201ENST00000215793 RPAP2Q8IXW5 612 aaPredicted RBP16.1■□□□□ 0.17
SF3A1-201ENST00000215793 CIZ1Q9ULV3 898 aaPredicted RBP16.1■□□□□ 0.17
SF3A1-201ENST00000215793 ANKRD30BQ9BXX2 1392 aa16.1■□□□□ 0.17
SF3A1-201ENST00000215793 FCHSD2O94868 740 aa16.1■□□□□ 0.17
SF3A1-201ENST00000215793 DACH1Q9UI36 760 aa16.1■□□□□ 0.17
SF3A1-201ENST00000215793 PRG4Q92954 1404 aaPredicted RBP16.1■□□□□ 0.17
SF3A1-201ENST00000215793 ZNHIT6Q9NWK9 470 aaKnown RBP16.1■□□□□ 0.17
SF3A1-201ENST00000215793 EFCAB5A4FU69 1503 aa16.09■□□□□ 0.17
SF3A1-201ENST00000215793 ERBINQ96RT1 1412 aa16.09■□□□□ 0.17
SF3A1-201ENST00000215793 RTEL1-TNFRSF6BF6WH68 1400 aa16.09■□□□□ 0.17
SF3A1-201ENST00000215793 KDM4AO75164 1064 aa16.09■□□□□ 0.17
SF3A1-201ENST00000215793 BLOC1S2Q6QNY1 142 aa16.09■□□□□ 0.17
SF3A1-201ENST00000215793 EHBP1L1Q8N3D4 1523 aa16.08■□□□□ 0.17
SF3A1-201ENST00000215793 TTLL5Q6EMB2 1281 aa16.08■□□□□ 0.17
SF3A1-201ENST00000215793 ZSCAN31Q96LW9 406 aaPredicted RBP16.08■□□□□ 0.17
SF3A1-201ENST00000215793 TROQ12816 1431 aaPredicted RBP16.08■□□□□ 0.17
SF3A1-201ENST00000215793 AKNAQ7Z591 1439 aa16.08■□□□□ 0.16
SF3A1-201ENST00000215793 KRT18P05783 430 aaKnown RBP16.08■□□□□ 0.16
SF3A1-201ENST00000215793 ME1P48163 572 aa16.08■□□□□ 0.16
SF3A1-201ENST00000215793 CEBPZQ03701 1054 aaKnown RBP16.08■□□□□ 0.16
SF3A1-201ENST00000215793 CCDC57Q2TAC2 916 aa16.08■□□□□ 0.16
SF3A1-201ENST00000215793 LARP1BQ659C4 914 aaKnown RBP16.08■□□□□ 0.16
SF3A1-201ENST00000215793 TNMDQ9H2S6 317 aa16.08■□□□□ 0.16
SF3A1-201ENST00000215793 LUC7LQ9NQ29 371 aaKnown RBP16.08■□□□□ 0.16
SF3A1-201ENST00000215793 STIM1Q13586 685 aa16.08■□□□□ 0.16
SF3A1-201ENST00000215793 CWC15Q9P013 229 aaKnown RBP16.08■□□□□ 0.16
SF3A1-201ENST00000215793 CTNNA3Q9UI47 895 aa16.07■□□□□ 0.16
SF3A1-201ENST00000215793 SERPINC1P01008 464 aa16.07■□□□□ 0.16
SF3A1-201ENST00000215793 KRT32Q14532 448 aa16.07■□□□□ 0.16
SF3A1-201ENST00000215793 STRN4Q9NRL3 753 aa16.07■□□□□ 0.16
SF3A1-201ENST00000215793 SRGAP3O43295 1099 aa16.07■□□□□ 0.16
SF3A1-201ENST00000215793 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.07■□□□□ 0.166e-7■■■■■ 66
SF3A1-201ENST00000215793 CDKL5O76039 1030 aa16.07■□□□□ 0.16
SF3A1-201ENST00000215793 BRPF1P55201 1214 aaPredicted RBP16.06■□□□□ 0.16
SF3A1-201ENST00000215793 SIL1Q9H173 461 aa16.06■□□□□ 0.16
SF3A1-201ENST00000215793 MPHOSPH8Q99549 860 aa16.06■□□□□ 0.16
SF3A1-201ENST00000215793 SYCP1Q15431 976 aa16.06■□□□□ 0.16
SF3A1-201ENST00000215793 CEP126Q9P2H0 1117 aa16.06■□□□□ 0.16
SF3A1-201ENST00000215793 TOM1L2Q6ZVM7 507 aa16.05■□□□□ 0.16
SF3A1-201ENST00000215793 CCDC69A6NI79 296 aa16.05■□□□□ 0.16
SF3A1-201ENST00000215793 KLHL34Q8N239 644 aa16.05■□□□□ 0.16
SF3A1-201ENST00000215793 CFAP45Q9UL16 551 aa16.05■□□□□ 0.16
SF3A1-201ENST00000215793 PPFIBP1Q86W92 1011 aa16.05■□□□□ 0.16
SF3A1-201ENST00000215793 AACSQ86V21 672 aa16.05■□□□□ 0.16
SF3A1-201ENST00000215793 TXLNBQ8N3L3 684 aa16.05■□□□□ 0.16
SF3A1-201ENST00000215793 NOL7Q9UMY1 257 aaKnown RBP16.05■□□□□ 0.16
SF3A1-201ENST00000215793 STK3Q13188 491 aa16.04■□□□□ 0.16
SF3A1-201ENST00000215793 PPP6R1Q9UPN7 881 aa16.04■□□□□ 0.16
SF3A1-201ENST00000215793 NFE2L2Q16236 605 aa16.03■□□□□ 0.16
SF3A1-201ENST00000215793 H0YHG0 523 aa16.03■□□□□ 0.16
SF3A1-201ENST00000215793 SOGA3Q5TF21 947 aa16.03■□□□□ 0.16
SF3A1-201ENST00000215793 CBFA2T2O43439 604 aa16.03■□□□□ 0.16
SF3A1-201ENST00000215793 PDRG1Q9NUG6 133 aa16.03■□□□□ 0.16
SF3A1-201ENST00000215793 CCDC66A2RUB6 948 aa16.02■□□□□ 0.16
SF3A1-201ENST00000215793 SPC24Q8NBT2 197 aa16.02■□□□□ 0.16
SF3A1-201ENST00000215793 CCDC191Q8NCU4 936 aa16.02■□□□□ 0.16
SF3A1-201ENST00000215793 DDX54Q8TDD1 881 aaKnown RBP16.02■□□□□ 0.15
SF3A1-201ENST00000215793 CCDC61Q9Y6R9 512 aa16.02■□□□□ 0.15
SF3A1-201ENST00000215793 MYL6BP14649 208 aa16.01■□□□□ 0.15
SF3A1-201ENST00000215793 WWC2Q6AWC2 1192 aa16.01■□□□□ 0.15
SF3A1-201ENST00000215793 CEP57L1Q8IYX8 460 aa16.01■□□□□ 0.15
SF3A1-201ENST00000215793 SPATA32Q96LK8 384 aa16.01■□□□□ 0.15
SF3A1-201ENST00000215793 GRPEL1Q9HAV7 217 aa16.01■□□□□ 0.15
SF3A1-201ENST00000215793 ERLIN2O94905 339 aa16.01■□□□□ 0.15
SF3A1-201ENST00000215793 FKBP4Q02790 459 aaKnown RBP eCLIP16.01■□□□□ 0.15
SF3A1-201ENST00000215793 SLFN5Q08AF3 891 aa16.01■□□□□ 0.15
SF3A1-201ENST00000215793 TMPOP42166 694 aaKnown RBP16.01■□□□□ 0.15
SF3A1-201ENST00000215793 TMEM132AQ24JP5 1023 aa16.01■□□□□ 0.15
SF3A1-201ENST00000215793 JAKMIP1Q96N16 626 aaKnown RBP16.01■□□□□ 0.15
SF3A1-201ENST00000215793 BCL11BQ9C0K0 894 aaPredicted RBP16.01■□□□□ 0.15
SF3A1-201ENST00000215793 BTBD11A6QL63 1104 aa16■□□□□ 0.15
SF3A1-201ENST00000215793 CCDC112Q8NEF3 446 aa16■□□□□ 0.15
SF3A1-201ENST00000215793 MCM4P33991 863 aa16■□□□□ 0.15
SF3A1-201ENST00000215793 UBAC1Q9BSL1 405 aa16■□□□□ 0.15
SF3A1-201ENST00000215793 PRDM11Q9NQV5 511 aa16■□□□□ 0.15
SF3A1-201ENST00000215793 ANKLE2Q86XL3 938 aa16■□□□□ 0.15
SF3A1-201ENST00000215793 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16■□□□□ 0.15
SF3A1-201ENST00000215793 NUP133Q8WUM0 1156 aa16■□□□□ 0.15
SF3A1-201ENST00000215793 DEF6Q9H4E7 631 aa16■□□□□ 0.15
SF3A1-201ENST00000215793 ATP2B2Q01814 1243 aa15.99■□□□□ 0.15
SF3A1-201ENST00000215793 BMP2KQ9NSY1 1161 aaPredicted RBP15.99■□□□□ 0.15
SF3A1-201ENST00000215793 AXDND1Q5T1B0 1012 aaPredicted RBP15.99■□□□□ 0.15
SF3A1-201ENST00000215793 CWC27Q6UX04 472 aaKnown RBP15.99■□□□□ 0.15
SF3A1-201ENST00000215793 WASF1Q92558 559 aa15.99■□□□□ 0.15
SF3A1-201ENST00000215793 BRPF3Q9ULD4 1205 aa15.99■□□□□ 0.15
SF3A1-201ENST00000215793 NUP62CLQ9H1M0 184 aa15.99■□□□□ 0.15
SF3A1-201ENST00000215793 IL1RAPL2Q9NP60 686 aa15.99■□□□□ 0.15
SF3A1-201ENST00000215793 PRXQ9BXM0 1461 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 160.9 ms