RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 WDR12Q9GZL7 423 aaKnown RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 TWSG1Q9GZX9 223 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ZNF700Q9H0M5 742 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 OSBPL5Q9H0X9 879 aaPredicted RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 CERS4Q9HA82 394 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 OBP2BQ9NPH6 170 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 G6PC2Q9NQR9 355 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 PRDM8Q9NQV8 689 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 KLHL1Q9NR64 748 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 HELLSQ9NRZ9 838 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ABCF3Q9NUQ8 709 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 GEMIN8Q9NWZ8 242 aaKnown RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 ZNF224Q9NZL3 707 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TMOD4Q9NZQ9 345 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TAAR2Q9P1P5 351 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 HDAC6Q9UBN7 1215 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 SEL1LQ9UBV2 794 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 CRCT1Q9UGL9 99 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 CDC23Q9UJX2 597 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 FBXO4Q9UKT5 387 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 RAB21Q9UL25 225 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TRPC5Q9UL62 973 aaPredicted RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 SLC39A10Q9ULF5 831 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 DAPP1Q9UN19 280 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 VDAC3Q9Y277 283 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 NTNG1Q9Y2I2 539 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 COPG1Q9Y678 874 aaKnown RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 MST1RQ04912 1400 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 IGLV3-10A0A075B6K4 115 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 A0A087X002 238 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 PNMA6EA0A0J9YXQ4 647 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 C11orf97A0A1B0GVM6 126 aaPredicted RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 TCRBV7S3A2A0A539 114 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 CPED1A4D0V7 1026 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 CBY3A6NI87 242 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 AGAP5A6NIR3 686 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 C3orf70A6NLC5 250 aaPredicted RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 H0Y3Z8 333 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 GRM8O00222 908 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 DNPH1O43598 174 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 PRC1O43663 620 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 CAND2O75155 1236 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 TIPRLO75663 272 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 FAM155BO75949 473 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 ACTL6BO94805 426 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 TMCC1O94876 653 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 VNN2O95498 520 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 DDAH2O95865 285 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 CSTBP04080 98 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 EDN1P05305 212 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 MMP3P08254 477 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SRGAP2BP0DMP2 458 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 ACP5P13686 325 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 GYS1P13807 737 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 IDEP14735 1019 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 GNB3P16520 340 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 KLRC2P26717 231 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 CHRNB4P30926 498 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 AKT1P31749 480 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SERPINF1P36955 418 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 RPL3P39023 403 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 IL15P40933 162 aaPredicted RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 TECP42680 631 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 MTNR1AP48039 350 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 FMO5P49326 533 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 RCAN1P53805 252 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 PRKAA2P54646 552 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 ALDH18A1P54886 795 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 PITX1P78337 314 aaPredicted RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 TNFAIP2Q03169 654 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 FOXO1Q12778 655 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 ITGA9Q13797 1035 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 TNFAIP1Q13829 316 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 CBFBQ13951 182 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SPARCL1Q14515 664 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SMAD1Q15797 465 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 RPE65Q16518 533 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 ZACNQ401N2 412 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 GALNTL6Q49A17 601 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 GXYLT1Q4G148 440 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 XKR4Q5GH76 650 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 ARL13AQ5H913 290 aaPredicted RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 SYCP2LQ5T4T6 812 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 ANKRD40Q6AI12 368 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SULT6B1Q6IMI4 303 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 JMJD6Q6NYC1 403 aaPredicted RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 FAM122CQ6P4D5 195 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 NFRKBQ6P4R8 1299 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 ZNF613Q6PF04 617 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 FBXO38Q6PIJ6 1188 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SLC30A9Q6PML9 568 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 KLHL24Q6TFL4 600 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 KSR2Q6VAB6 950 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 KRT27Q7Z3Y8 459 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 RNF144BQ7Z419 303 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SRLQ86TD4 932 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SLC9B2Q86UD5 537 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 APLFQ8IW19 511 aaPredicted RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 SCN4BQ8IWT1 228 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SUGP1Q8IWZ8 645 aaKnown RBP0.5□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms