RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 BRAT1Q6PJG6 821 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 SLC36A4Q6YBV0 504 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 SLC41A1Q8IVJ1 513 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 TBC1D3Q8IZP1 549 aaPredicted RBP13.31□□□□□ -0.28
GTF3A-209ENST00000640289 PAF1Q8N7H5 531 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 GLIS1Q8NBF1 620 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 HCAR2Q8TDS4 363 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 TADA1Q96BN2 335 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 OXNAD1Q96HP4 312 aaPredicted RBP13.31□□□□□ -0.28
GTF3A-209ENST00000640289 SPATA13Q96N96 652 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 PHOX2BQ99453 314 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 FERMT1Q9BQL6 677 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 TDRD1Q9BXT4 1180 aaKnown RBP13.31□□□□□ -0.28
GTF3A-209ENST00000640289 EPC1Q9H2F5 836 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 TRHDEQ9UKU6 1024 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 CHKBQ9Y259 395 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 PCDHB9Q9Y5E1 797 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 FADS3Q9Y5Q0 445 aa13.31□□□□□ -0.28
GTF3A-209ENST00000640289 C5orf60A6NFR6 353 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 UPK3BL1B0FP48 263 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 UPK3BL2E5RIL1 263 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 PDE2AO00408 941 aaPredicted RBP13.3□□□□□ -0.28
GTF3A-209ENST00000640289 FZD6O60353 706 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 PGLSO95336 258 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 CPP00450 1065 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 PRLP01236 227 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 IFNB1P01574 187 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 ITGAVP06756 1048 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 ETS1P14921 441 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 XPAP23025 273 aaPredicted RBP13.3□□□□□ -0.28
GTF3A-209ENST00000640289 PSMB4P28070 264 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 DHPSP49366 369 aaPredicted RBP13.3□□□□□ -0.28
GTF3A-209ENST00000640289 CCDC15Q0P6D6 951 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 PTPRRQ15256 657 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 PCSK7Q16549 785 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 ARMC12Q5T9G4 340 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 ITPRIPL1Q6GPH6 555 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 TTC27Q6P3X3 843 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 DRICH1Q6PGQ1 229 aaPredicted RBP13.3□□□□□ -0.28
GTF3A-209ENST00000640289 LPCAT2Q7L5N7 544 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 KDELC2Q7Z4H8 507 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 C11orf74Q86VG3 221 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 TAB3Q8N5C8 712 aaPredicted RBP13.3□□□□□ -0.28
GTF3A-209ENST00000640289 OR2T34Q8NGX1 318 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 RTP4Q96DX8 246 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 ZC3H10Q96K80 434 aaKnown RBP13.3□□□□□ -0.28
GTF3A-209ENST00000640289 HSPA12BQ96MM6 686 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 SMIM14Q96QK8 99 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 FCRL5Q96RD9 977 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 NAP1L3Q99457 506 aaPredicted RBP13.3□□□□□ -0.28
GTF3A-209ENST00000640289 GBA3Q9H227 469 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 PCDH12Q9NPG4 1184 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 DRG1Q9Y295 367 aaKnown RBP13.3□□□□□ -0.28
GTF3A-209ENST00000640289 EML5Q05BV3 1969 aa13.3□□□□□ -0.28
GTF3A-209ENST00000640289 LRRC72A6NJI9 287 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 METTL12A8MUP2 240 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 AREL1O15033 823 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 OPHN1O60890 802 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 RNGTTO60942 597 aaKnown RBP13.29□□□□□ -0.28
GTF3A-209ENST00000640289 PMPCBO75439 489 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 GCATO75600 419 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 FSBPO95073 299 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 PCDH8O95206 1070 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 METTL18O95568 372 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 CTPS1P17812 591 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 MAOBP27338 520 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 MAT2AP31153 395 aaKnown RBP13.29□□□□□ -0.28
GTF3A-209ENST00000640289 STIP1P31948 543 aaKnown RBP13.29□□□□□ -0.28
GTF3A-209ENST00000640289 FAM193AP78312 1265 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 NHLH1Q02575 133 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 ELF2Q15723 593 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 FAXCQ5TGI0 409 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 KIAA0895LQ68EN5 471 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 KDELC1Q6UW63 502 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 ARHGEF18Q6ZSZ5 1173 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 ZSCAN30Q86W11 494 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 C12orf50Q8NA57 414 aaPredicted RBP13.29□□□□□ -0.28
GTF3A-209ENST00000640289 SUMF1Q8NBK3 374 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 LPCAT1Q8NF37 534 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 PIH1D2Q8WWB5 315 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 SNX19Q92543 992 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 MAGOHBQ96A72 148 aaKnown RBP13.29□□□□□ -0.28
GTF3A-209ENST00000640289 RAB7BQ96AH8 199 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 BIRC7Q96CA5 298 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 MLPHQ9BV36 600 aaPredicted RBP13.29□□□□□ -0.28
GTF3A-209ENST00000640289 PCDH9Q9HC56 1237 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 HOMER3Q9NSC5 361 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 FAM153AQ9UHL3 310 aa13.29□□□□□ -0.28
GTF3A-209ENST00000640289 SMG5Q9UPR3 1016 aaKnown RBP13.29□□□□□ -0.28
GTF3A-209ENST00000640289 ZFR2Q9UPR6 939 aaKnown RBP13.29□□□□□ -0.28
GTF3A-209ENST00000640289 ATXN2Q99700 1313 aaKnown RBP13.29□□□□□ -0.28
GTF3A-209ENST00000640289 A0A0U1RQS6 177 aa13.28□□□□□ -0.28
GTF3A-209ENST00000640289 A0A1W2PQU0 124 aa13.28□□□□□ -0.28
GTF3A-209ENST00000640289 MEI4A8MW99 385 aa13.28□□□□□ -0.28
GTF3A-209ENST00000640289 A8MX80 341 aa13.28□□□□□ -0.28
GTF3A-209ENST00000640289 C10orf142B7Z368 130 aa13.28□□□□□ -0.28
GTF3A-209ENST00000640289 NEMP1O14524 444 aa13.28□□□□□ -0.28
GTF3A-209ENST00000640289 RIOK3O14730 519 aaKnown RBP13.28□□□□□ -0.28
GTF3A-209ENST00000640289 AP1G1O43747 822 aa13.28□□□□□ -0.28
GTF3A-209ENST00000640289 PHF2O75151 1096 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms