RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ALPIP09923 528 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 HGFP14210 728 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 PRKCSHP14314 528 aaPredicted RBP19.62■□□□□ 0.73
CLN3-262ENST00000637699 HK3P52790 923 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 NOMO3P69849 1222 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 NRG1Q02297 640 aaPredicted RBP19.62■□□□□ 0.73
CLN3-262ENST00000637699 ALG11Q2TAA5 492 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 CCDC14Q49A88 953 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 VWA3BQ502W6 1294 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 HSP90AA4PQ58FG1 418 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 USP53Q70EK8 1073 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 TBC1D31Q96DN5 1066 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 CPEB1Q9BZB8 566 aaKnown RBP19.62■□□□□ 0.73
CLN3-262ENST00000637699 EDEM3Q9BZQ6 932 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 TTYH3Q9C0H2 523 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 STRADBQ9C0K7 418 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 GPR34Q9UPC5 381 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 PCDHGA7Q9Y5G6 932 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 CHD5Q8TDI0 1954 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 NAV2Q8IVL1 2488 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 AHCTF1Q8WYP5 2266 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 D6RAR5 112 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 AGRPO00253 132 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 PES1O00541 588 aaKnown RBP19.61■□□□□ 0.73
CLN3-262ENST00000637699 PLEKP08567 350 aaPredicted RBP19.61■□□□□ 0.73
CLN3-262ENST00000637699 XPAP23025 273 aaPredicted RBP19.61■□□□□ 0.73
CLN3-262ENST00000637699 INHBCP55103 352 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 RAD51Q06609 339 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 SRSF6Q13247 344 aaKnown RBP19.61■□□□□ 0.73
CLN3-262ENST00000637699 EIF3IQ13347 325 aaKnown RBP19.61■□□□□ 0.73
CLN3-262ENST00000637699 LRRC14Q15048 493 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 KLHDC7AQ5VTJ3 777 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 LVRNQ6Q4G3 990 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 ENPP7Q6UWV6 458 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 NYAP1Q6ZVC0 841 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 FAM117AQ9C073 453 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 RETREG1Q9H6L5 497 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 NEU3Q9UQ49 428 aa19.61■□□□□ 0.73
CLN3-262ENST00000637699 HEMK1Q9Y5R4 338 aaPredicted RBP19.61■□□□□ 0.73
CLN3-262ENST00000637699 SPTA1P02549 2419 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 A0A1W2PQM1 296 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 TMX2-CTNND1H3BSU7 103 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 ARHGAP6O43182 974 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 NOBOXO60393 691 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 RASGRP1O95267 797 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 IGSF6O95976 241 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 SDC4P31431 198 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 PEX5P50542 639 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 RHOAP61586 193 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 WSCD2Q2TBF2 565 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 LINC00303Q3SY05 128 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 MIIPQ5JXC2 388 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 GKN2Q86XP6 184 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 CCDC185Q8N715 623 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 GPT2Q8TD30 523 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 EPS8L1Q8TE68 723 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 TUBGCP2Q9BSJ2 902 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 TRIM4Q9C037 500 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 KLC2Q9H0B6 622 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 DKK3Q9UBP4 350 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 PISDQ9UG56 409 aa19.6■□□□□ 0.73
CLN3-262ENST00000637699 ZSCAN5CA6NGD5 496 aaPredicted RBP19.59■□□□□ 0.73
CLN3-262ENST00000637699 TMEM110-MUSTN1A8MSY1 372 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 INSIG1O15503 277 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 JMJD7P0C870 316 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 HTR1BP28222 390 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 INPP5AQ14642 412 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 TMEM52BQ4KMG9 183 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 FAM114A1Q8IWE2 563 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 Q8N9G6 341 aaPredicted RBP19.59■□□□□ 0.73
CLN3-262ENST00000637699 MLKLQ8NB16 471 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 JOSD2Q8TAC2 188 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 SLC20A1Q8WUM9 679 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 EXTL1Q92935 676 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 SGF29Q96ES7 293 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 TMEM74Q96NL1 305 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 ARHGAP9Q9BRR9 750 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 APOOQ9BUR5 198 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 NAA15Q9BXJ9 866 aaKnown RBP19.59■□□□□ 0.73
CLN3-262ENST00000637699 LRRN3Q9H3W5 708 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 KLQ9UEF7 1012 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 MFHAS1Q9Y4C4 1052 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 OR1A2Q9Y585 309 aa19.59■□□□□ 0.73
CLN3-262ENST00000637699 UNC13CQ8NB66 2214 aa19.58■□□□□ 0.73
CLN3-262ENST00000637699 PIGNO95427 931 aa19.58■□□□□ 0.72
CLN3-262ENST00000637699 UCHL3P15374 230 aa19.58■□□□□ 0.72
CLN3-262ENST00000637699 SRP54P61011 504 aaKnown RBP19.58■□□□□ 0.72
CLN3-262ENST00000637699 ELP6Q0PNE2 266 aa19.58■□□□□ 0.72
CLN3-262ENST00000637699 NFATC4Q14934 902 aa19.58■□□□□ 0.72
CLN3-262ENST00000637699 SLC30A5Q8TAD4 765 aa19.58■□□□□ 0.72
CLN3-262ENST00000637699 EXOC2Q96KP1 924 aa19.58■□□□□ 0.72
CLN3-262ENST00000637699 NCAPGQ9BPX3 1015 aa19.58■□□□□ 0.72
CLN3-262ENST00000637699 NOL6Q9H6R4 1146 aaKnown RBP19.58■□□□□ 0.72
CLN3-262ENST00000637699 C2CD4BA6NLJ0 364 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 F8VZ95 297 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 ITIH1P19827 911 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 MMP8P22894 467 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 CCKBRP32239 447 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 CSRP3P50461 194 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 HDAC4P56524 1084 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms