RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SP110Q9HB58 689 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 MSRB2Q9Y3D2 182 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 RCCD1A6NED2 376 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 POM121BA6NF01 834 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 A6NNZ2 444 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 NEMP1O14524 444 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 MUSKO15146 869 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 PIGNO95427 931 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 SGCGQ13326 291 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 HADHQ16836 314 aaKnown RBP19.44■□□□□ 0.7
CLN3-260ENST00000637578 KYAT3Q6YP21 454 aaKnown RBP19.44■□□□□ 0.7
CLN3-260ENST00000637578 Q6ZSR6 202 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 CPNE8Q86YQ8 564 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 PNPLA1Q8N8W4 532 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 DENND6BQ8NEG7 585 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 GATA6Q92908 595 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 IFT43Q96FT9 208 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 KLK13Q9UKR3 277 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 COL5A1P20908 1838 aaPredicted RBP19.43■□□□□ 0.7
CLN3-260ENST00000637578 MAFKO60675 156 aa19.43■□□□□ 0.7
CLN3-260ENST00000637578 ITIH2P19823 946 aa19.43■□□□□ 0.7
CLN3-260ENST00000637578 VAV2P52735 878 aa19.43■□□□□ 0.7
CLN3-260ENST00000637578 CDH6P55285 790 aa19.43■□□□□ 0.7
CLN3-260ENST00000637578 SLC10A7Q0GE19 358 aa19.43■□□□□ 0.7
CLN3-260ENST00000637578 UGP2Q16851 508 aa19.43■□□□□ 0.7
CLN3-260ENST00000637578 TMEM52BQ4KMG9 183 aa19.43■□□□□ 0.7
CLN3-260ENST00000637578 BRAT1Q6PJG6 821 aa19.43■□□□□ 0.7
CLN3-260ENST00000637578 CAMK1DQ8IU85 385 aa19.43■□□□□ 0.7
CLN3-260ENST00000637578 RHOT2Q8IXI1 618 aa19.43■□□□□ 0.7
CLN3-260ENST00000637578 ECHDC3Q96DC8 303 aa19.43■□□□□ 0.7
CLN3-260ENST00000637578 CINPQ9BW66 212 aaPredicted RBP19.43■□□□□ 0.7
CLN3-260ENST00000637578 NRDCO43847 1150 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 CD48P09326 243 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 MAN1A1P33908 653 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 ELP6Q0PNE2 266 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 LBRQ14739 615 aaKnown RBP19.42■□□□□ 0.7
CLN3-260ENST00000637578 ATP13A4Q4VNC1 1196 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 LRRC73Q5JTD7 316 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 TMCO4Q5TGY1 634 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 ZSWIM9Q86XI8 627 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 SPOCK2Q92563 424 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 NSMCE3Q96MG7 304 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 LACRTQ9GZZ8 138 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 FTSJ1Q9UET6 329 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 SEPT3Q9UH03 358 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 EPG5Q9HCE0 2579 aa19.42■□□□□ 0.7
CLN3-260ENST00000637578 TRAFD1O14545 582 aaPredicted RBP19.41■□□□□ 0.7
CLN3-260ENST00000637578 MMP20O60882 483 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 MTA2O94776 668 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 SERPINB6P35237 376 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 RABIFP47224 123 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 RENBPP51606 427 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 TAS2R40P59535 323 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 PFN3P60673 137 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 CCDC173Q0VFZ6 552 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 MMRN1Q13201 1228 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 DPYSL3Q14195 570 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 KRT81Q14533 505 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 TCEAL1Q15170 157 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 KIAA1328Q86T90 577 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 LRRC49Q8IUZ0 686 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 SLC25A45Q8N413 288 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 CALN1Q9BXU9 219 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 KCNF1Q9H3M0 494 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 ATP13A3Q9H7F0 1226 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 ADGRG1Q9Y653 693 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 FRYQ5TBA9 3013 aa19.41■□□□□ 0.7
CLN3-260ENST00000637578 ARID1BQ8NFD5 2236 aaPredicted RBP19.41■□□□□ 0.7
CLN3-260ENST00000637578 A0A0U1RQJ8 604 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 SPTY2D1-AS1A0A0U1RR47 76 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 RIOK3O14730 519 aaKnown RBP19.4■□□□□ 0.7
CLN3-260ENST00000637578 FPGTO14772 594 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 TM7SF2O76062 418 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 CR2P20023 1033 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 FZD2Q14332 565 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 PDK2Q15119 407 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 UNQ6494/PRO21346Q6UXR6 183 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 EID2Q8N6I1 236 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 FAF2Q96CS3 445 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 PCDH12Q9NPG4 1184 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 SALL4Q9UJQ4 1053 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 A0A0A6YYK5 440 aaPredicted RBP19.4■□□□□ 0.7
CLN3-260ENST00000637578 C1QTNF9BB2RNN3 333 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 LDOC1O95751 146 aaPredicted RBP19.4■□□□□ 0.7
CLN3-260ENST00000637578 PROS1P07225 676 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 KRT7P08729 469 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 C1QTNF9P0C862 333 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 DGKAP23743 735 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 SERPINA4P29622 427 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 HSPA9P38646 679 aaKnown RBP19.4■□□□□ 0.7
CLN3-260ENST00000637578 SSR1P43307 286 aaKnown RBP19.4■□□□□ 0.7
CLN3-260ENST00000637578 AP1S1P61966 158 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 PAFAH1B3Q15102 231 aaKnown RBP19.4■□□□□ 0.7
CLN3-260ENST00000637578 AGERQ15109 404 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 PTAR1Q7Z6K3 402 aaPredicted RBP19.4■□□□□ 0.7
CLN3-260ENST00000637578 PCDH19Q8TAB3 1148 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 CXorf40AQ8TE69 158 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 CNDP2Q96KP4 475 aaKnown RBP19.4■□□□□ 0.7
CLN3-260ENST00000637578 ZNF830Q96NB3 372 aaPredicted RBP19.4■□□□□ 0.7
CLN3-260ENST00000637578 ZNF670Q9BS34 389 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms