RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SLC13A5Q86YT5 568 aaPredicted RBP20.48■□□□□ 0.87
PTCD3-220ENST00000627371 CDKL3Q8IVW4 592 aaPredicted RBP20.48■□□□□ 0.87
PTCD3-220ENST00000627371 SLC35F6Q8N357 371 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 ARRDC2Q8TBH0 407 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 HTR3CQ8WXA8 447 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 SNX19Q92543 992 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 AGAP3Q96P47 875 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 VAT1Q99536 393 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 FAM118BQ9BPY3 351 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 TMEM74BQ9NUR3 256 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 EIF2B4Q9UI10 523 aaKnown RBP20.48■□□□□ 0.87
PTCD3-220ENST00000627371 PCDHGC4Q9Y5F7 938 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 TCRBV7S2A1N4TA0A589 114 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 UPK3BL1B0FP48 263 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 UPK3BL2E5RIL1 263 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 ENC1O14682 589 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 AREL1O15033 823 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 RNGTTO60942 597 aaKnown RBP20.47■□□□□ 0.87
PTCD3-220ENST00000627371 SERPINF2P08697 491 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 XPAP23025 273 aaPredicted RBP20.47■□□□□ 0.87
PTCD3-220ENST00000627371 CD27P26842 260 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 MAOBP27338 520 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 NIPAL4Q0D2K0 466 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 SPEM2Q0P670 501 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 LRRC73Q5JTD7 316 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 DCLK2Q8N568 766 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 TEKT5Q96M29 485 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 ORAI3Q9BRQ5 295 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 VPS45Q9NRW7 570 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 SUSD2Q9UGT4 822 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 ITM2BQ9Y287 266 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 ADAMTS9Q9P2N4 1935 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 ZNF292O60281 2723 aa20.47■□□□□ 0.87
PTCD3-220ENST00000627371 GVINP1Q7Z2Y8 2422 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 LAMA1P25391 3075 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 A0A1W2PPC4 97 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 TSPAN6O43657 245 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 ZNF189O75820 626 aaPredicted RBP20.46■□□□□ 0.87
PTCD3-220ENST00000627371 PCDH8O95206 1070 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 RBL1P28749 1068 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 POLR2LP62875 67 aaKnown RBP20.46■□□□□ 0.87
PTCD3-220ENST00000627371 ELP6Q0PNE2 266 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 IHHQ14623 411 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 FAM182AQ5T1J6 154 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 KIAA1161Q6NSJ0 714 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 RABEPKQ7Z6M1 372 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 ZSCAN30Q86W11 494 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 HORMAD1Q86X24 394 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.46■□□□□ 0.87
PTCD3-220ENST00000627371 PAF1Q8N7H5 531 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 PDCD6IPQ8WUM4 868 aaKnown RBP20.46■□□□□ 0.87
PTCD3-220ENST00000627371 FERMT1Q9BQL6 677 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 MIR1-1HGQ9H1L0 117 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 PARD6AQ9NPB6 346 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 GGT7Q9UJ14 662 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 R3HDM2Q9Y2K5 976 aaKnown RBP20.46■□□□□ 0.87
PTCD3-220ENST00000627371 RAI2Q9Y5P3 530 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 PCDH15Q96QU1 1955 aa20.46■□□□□ 0.87
PTCD3-220ENST00000627371 A0A1W2PQU0 124 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 NEMP1O14524 444 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 PGLSO95336 258 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 CPP00450 1065 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 MMP2P08253 660 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 GNSP15586 552 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 TGM1P22735 817 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 NUDT1P36639 197 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 RPS21P63220 83 aaKnown RBP20.45■□□□□ 0.86
PTCD3-220ENST00000627371 CCDC6Q16204 474 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 TMEM259Q4ZIN3 620 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 ARMC12Q5T9G4 340 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 ERAP2Q6P179 960 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 DARS2Q6PI48 645 aaKnown RBP20.45■□□□□ 0.86
PTCD3-220ENST00000627371 PRPF39Q86UA1 669 aaKnown RBP20.45■□□□□ 0.86
PTCD3-220ENST00000627371 ZCCHC9Q8N567 271 aaKnown RBP20.45■□□□□ 0.86
PTCD3-220ENST00000627371 C1orf216Q8TAB5 229 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 CEP76Q8TAP6 659 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 IMP4Q96G21 291 aaKnown RBP20.45■□□□□ 0.86
PTCD3-220ENST00000627371 FEM1CQ96JP0 617 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 TDRD1Q9BXT4 1180 aaKnown RBP20.45■□□□□ 0.86
PTCD3-220ENST00000627371 SLC25A51Q9H1U9 297 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 C10orf88Q9H8K7 445 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 EBF2Q9HAK2 575 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 GLOD4Q9HC38 313 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 PCDH12Q9NPG4 1184 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 KCND1Q9NSA2 647 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 SEMA4GQ9NTN9 838 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 KLHL8Q9P2G9 620 aaPredicted RBP20.45■□□□□ 0.86
PTCD3-220ENST00000627371 ZFR2Q9UPR6 939 aaKnown RBP20.45■□□□□ 0.86
PTCD3-220ENST00000627371 PCDHB9Q9Y5E1 797 aa20.45■□□□□ 0.86
PTCD3-220ENST00000627371 RIOK3O14730 519 aaKnown RBP20.44■□□□□ 0.86
PTCD3-220ENST00000627371 FZD6O60353 706 aa20.44■□□□□ 0.86
PTCD3-220ENST00000627371 ATP1A1P05023 1023 aaKnown RBP20.44■□□□□ 0.86
PTCD3-220ENST00000627371 ZNF806P0C7X5 589 aa20.44■□□□□ 0.86
PTCD3-220ENST00000627371 ITIH2P19823 946 aa20.44■□□□□ 0.86
PTCD3-220ENST00000627371 CA4P22748 312 aa20.44■□□□□ 0.86
PTCD3-220ENST00000627371 MAT2AP31153 395 aaKnown RBP20.44■□□□□ 0.86
PTCD3-220ENST00000627371 CXCR5P32302 372 aa20.44■□□□□ 0.86
PTCD3-220ENST00000627371 CD68P34810 354 aaPredicted RBP20.44■□□□□ 0.86
PTCD3-220ENST00000627371 MMP12P39900 470 aa20.44■□□□□ 0.86
PTCD3-220ENST00000627371 CD86P42081 329 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms