RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 KLKB1P03952 638 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 UGT2B4P06133 528 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 TSHRP16473 764 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 CPA2P48052 419 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 GRM3Q14832 879 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 BHLHA9Q7RTU4 235 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 RMDN2Q96LZ7 410 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 FCRL3Q96P31 734 aaPredicted RBP15.85■□□□□ 0.13
CPSF1-213ENST00000620219 VN1R3Q9BXE9 311 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 EIF2B3Q9NR50 452 aaKnown RBP15.85■□□□□ 0.13
CPSF1-213ENST00000620219 TMEM51Q9NW97 253 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 TCAF1Q9Y4C2 921 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 ACTL7BQ9Y614 415 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 A0A0U1RQS6 177 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 K7ERQ8 282 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 INSIG1O15503 277 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 ASMTLO95671 621 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 FAM83EQ2M2I3 478 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 TMEM240Q5SV17 173 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 CDHR3Q6ZTQ4 885 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 SLC39A13Q96H72 371 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 SNX2O60749 519 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 RALBP11234 206 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 LAMB3Q13751 1172 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 RPS6KA2Q15349 733 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 NADSYN1Q6IA69 706 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 FSTL4Q6MZW2 842 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 BEND5Q7L4P6 421 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 TSPAN17Q96FV3 270 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 SOX13Q9UN79 622 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 FAM237BA0A1B0GVD1 139 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 CAPN15O75808 1086 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 C2P06681 752 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 SCTRP47872 440 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 OTOAQ7RTW8 1153 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 RTP4Q96DX8 246 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 COMMD8Q9NX08 183 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 TRIM33Q9UPN9 1127 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 APOBEC2Q9Y235 224 aaKnown RBP15.84■□□□□ 0.13
CPSF1-213ENST00000620219 ZNF197O14709 1029 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 PDK4Q16654 411 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 MTDHQ86UE4 582 aaKnown RBP15.84■□□□□ 0.13
CPSF1-213ENST00000620219 TDRPQ86YL5 185 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 CFAP61Q8NHU2 1237 aa15.84■□□□□ 0.13
CPSF1-213ENST00000620219 USP1O94782 785 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 NDST3O95803 873 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 MT-CO1P00395 513 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 S100BP04271 92 aaPredicted RBP15.83■□□□□ 0.13
CPSF1-213ENST00000620219 FGF1P05230 155 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 SERPINA4P29622 427 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 NIPAL4Q0D2K0 466 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 SEMA3BQ13214 749 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 SIRPB2Q5JXA9 342 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 SNX30Q5VWJ9 437 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 NLRP9Q7RTR0 991 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 NAT14Q8WUY8 206 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 ZFYVE19Q96K21 471 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 TSGA13Q96PP4 275 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 CATSPERZQ9NTU4 200 aa15.83■□□□□ 0.13
CPSF1-213ENST00000620219 HMGA1P17096 107 aaKnown RBP15.83■□□□□ 0.12
CPSF1-213ENST00000620219 HLA-DPA1P20036 260 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 TTC7BQ86TV6 843 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 WBP2Q969T9 261 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 TMEM237Q96Q45 408 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 HEY2Q9UBP5 337 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 DNAJC16Q9Y2G8 782 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 ILVBLA1L0T0 632 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 SUPT3HB4E1H0 165 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 SUPT3HO75486 399 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 ESRRAP11474 423 aaPredicted RBP15.83■□□□□ 0.12
CPSF1-213ENST00000620219 WASP42768 502 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 HABP4Q5JVS0 413 aaKnown RBP15.83■□□□□ 0.12
CPSF1-213ENST00000620219 FAM151BQ6UXP7 276 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 GRAMD1AQ96CP6 724 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 NMRAL1Q9HBL8 299 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 HACD3Q9P035 362 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 HAO1Q9UJM8 370 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 USH1CQ9Y6N9 552 aa15.83■□□□□ 0.12
CPSF1-213ENST00000620219 PRAMEF11O60813 436 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 DCTN3O75935 186 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 SUPT7LO94864 414 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 CCDC166P0CW27 439 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 STK19P49842 368 aaPredicted RBP15.82■□□□□ 0.12
CPSF1-213ENST00000620219 SNRPD1P62314 119 aaKnown RBP15.82■□□□□ 0.12
CPSF1-213ENST00000620219 KDSRQ06136 332 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 LY6G5CQ5SRR4 150 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 GAREM2Q75VX8 874 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 ZNF534Q76KX8 674 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 SPRED2Q7Z698 418 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 SCML4Q8N228 414 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 BANPQ8N9N5 519 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 MYLIPQ8WY64 445 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 MYEOVQ96EZ4 313 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 ARMCX1Q9P291 453 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 RWDD3Q9Y3V2 267 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 LYPLA1O75608 230 aaPredicted RBP15.82■□□□□ 0.12
CPSF1-213ENST00000620219 ALPIP09923 528 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 SGSHP51688 502 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 FNDC3BQ53EP0 1204 aaKnown RBP15.82■□□□□ 0.12
CPSF1-213ENST00000620219 ACBD5Q5T8D3 534 aaPredicted RBP15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms