RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 FNIP1Q8TF40 1166 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 CCDC97Q96F63 343 aaPredicted RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 HMCESQ96FZ2 354 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 LGMNQ99538 433 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 BOCQ9BWV1 1114 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 RAB6CQ9H0N0 254 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 SUV39H2Q9H5I1 410 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 PRORYQ9H606 182 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 NOL6Q9H6R4 1146 aaKnown RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 ATP13A3Q9H7F0 1226 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 ACTL7AQ9Y615 435 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 HELZ2Q9BYK8 2649 aaKnown RBP12.04□□□□□ -0.48
UPF3B-204ENST00000619445 GCN1Q92616 2671 aaKnown RBP12.04□□□□□ -0.48
UPF3B-204ENST00000619445 LY6G6EA0A0G2JKS1 128 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 TSPAN11A1L157 253 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 TMX2-CTNND1H3BSU7 103 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 DAPK3O43293 454 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 MMP20O60882 483 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 USP12O75317 370 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 NEBLO76041 1014 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 GJB6O95452 261 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 GZMAP12544 262 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 ATP1A3P13637 1013 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 TIMP2P16035 220 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 SERPINA4P29622 427 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 EIF4A3P38919 411 aaKnown RBP12.04□□□□□ -0.48
UPF3B-204ENST00000619445 RPL7AP62424 266 aaKnown RBP12.04□□□□□ -0.48
UPF3B-204ENST00000619445 GABREP78334 506 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 EIF2B5Q13144 721 aaKnown RBP12.04□□□□□ -0.48
UPF3B-204ENST00000619445 UGP2Q16851 508 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 ISXQ2M1V0 245 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 KLHL40Q2TBA0 621 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 C6orf132Q5T0Z8 1188 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 CCDC183Q5T5S1 534 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 FAXCQ5TGI0 409 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 RBM44Q6ZP01 1051 aaKnown RBP12.04□□□□□ -0.48
UPF3B-204ENST00000619445 GPR155Q7Z3F1 870 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 PYROXD2Q8N2H3 581 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 LZTR1Q8N653 840 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 TRIM11Q96F44 468 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 DPH1Q9BZG8 443 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 LRRC19Q9H756 370 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 KCTD5Q9NXV2 234 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 AP4E1Q9UPM8 1137 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 DOLKQ9UPQ8 538 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 ITM2BQ9Y287 266 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 SCINQ9Y6U3 715 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 U3KQA8 63 aa12.04□□□□□ -0.48
UPF3B-204ENST00000619445 A0A1W2PQ67 120 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 CPED1A4D0V7 1026 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 SMTNL1A8MU46 457 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 EEF2KO00418 725 aaKnown RBP12.03□□□□□ -0.48
UPF3B-204ENST00000619445 ATXN7O15265 892 aaPredicted RBP12.03□□□□□ -0.48
UPF3B-204ENST00000619445 SPINT1O43278 529 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 PRAMEF11O60813 436 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 RASGRP1O95267 797 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 CTSEP14091 401 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 KELP23276 732 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 PSMA2P25787 234 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 RBMS1P29558 406 aaKnown RBP12.03□□□□□ -0.48
UPF3B-204ENST00000619445 IGFALSP35858 605 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 HCAR3P49019 387 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 RENBPP51606 427 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 TLE3Q04726 772 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 NSUN2Q08J23 767 aaKnown RBP eCLIP12.03□□□□□ -0.48
UPF3B-204ENST00000619445 MAMLD1Q13495 774 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 MTM1Q13496 603 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 CDKN3Q16667 212 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 DEFB133Q30KQ1 61 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 ERMARDQ5T6L9 678 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 PLEKHA7Q6IQ23 1121 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 LEKR1Q6ZMV7 388 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 EFL1Q7Z2Z2 1120 aaKnown RBP12.03□□□□□ -0.48
UPF3B-204ENST00000619445 GKN2Q86XP6 184 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 TP53I13Q8NBR0 393 aaPredicted RBP12.03□□□□□ -0.48
UPF3B-204ENST00000619445 HIC2Q96JB3 615 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 FCRL3Q96P31 734 aaPredicted RBP12.03□□□□□ -0.48
UPF3B-204ENST00000619445 BPIFA3Q9BQP9 254 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 LRRC61Q9BV99 259 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 LHX3Q9UBR4 397 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 KLF15Q9UIH9 416 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 GGT7Q9UJ14 662 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 ATP8A1Q9Y2Q0 1164 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 PCDHGA8Q9Y5G5 932 aa12.03□□□□□ -0.48
UPF3B-204ENST00000619445 PRPSAP2O60256 369 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 PALMO75781 387 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 MYBL1P10243 752 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 ITPKBP27987 946 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 MMP12P39900 470 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 HK3P52790 923 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 ADKP55263 362 aaKnown RBP12.02□□□□□ -0.49
UPF3B-204ENST00000619445 TMPRSS3P57727 454 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 NFATC4Q14934 902 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 CYTH1Q15438 398 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 GUSBP11Q6P575 273 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 IRF2BP2Q7Z5L9 587 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 SPACA3Q8IXA5 215 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 ARL14Q8N4G2 192 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 PAF1Q8N7H5 531 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 ARL10Q8N8L6 244 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms