RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SPATA13Q96N96 652 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 SEZ6LQ9BYH1 1024 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 MTMR12Q9C0I1 747 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 DHX35Q9H5Z1 703 aaKnown RBP10.9□□□□□ -0.66
UPF3A-212ENST00000619079 GABBR1Q9UBS5 961 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 HTTP42858 3142 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 E2F8A0AVK6 867 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 HACD1B0YJ81 288 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 MRASO14807 208 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 AREL1O15033 823 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 PHGDHO43175 533 aaKnown RBP10.9□□□□□ -0.66
UPF3A-212ENST00000619079 DEAF1O75398 565 aaPredicted RBP10.9□□□□□ -0.66
UPF3A-212ENST00000619079 MYO1DO94832 1006 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 GNRH1P01148 92 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 NTRK1P04629 796 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 UGT2B4P06133 528 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 SNRPB2P08579 225 aaKnown RBP10.9□□□□□ -0.66
UPF3A-212ENST00000619079 LEPRP48357 1165 aaKnown RBP10.9□□□□□ -0.66
UPF3A-212ENST00000619079 NAGLUP54802 743 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 CAP1Q01518 475 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 BNIP2Q12982 314 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 MAP2K5Q13163 448 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 BFSP2Q13515 415 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 FASTKQ14296 549 aaKnown RBP10.9□□□□□ -0.66
UPF3A-212ENST00000619079 PRMT9Q6P2P2 845 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 SCARA5Q6ZMJ2 495 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 MMAAQ8IVH4 418 aaKnown RBP10.9□□□□□ -0.66
UPF3A-212ENST00000619079 PARP8Q8N3A8 854 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 SNX25Q9H3E2 840 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 TASP1Q9H6P5 420 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 FANCEQ9HB96 536 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 IFT80Q9P2H3 777 aaPredicted RBP10.9□□□□□ -0.66
UPF3A-212ENST00000619079 SRRDQ9UH36 339 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 SEPT9Q9UHD8 586 aaPredicted RBP10.9□□□□□ -0.66
UPF3A-212ENST00000619079 TLK1Q9UKI8 766 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 GABRQQ9UN88 632 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 AURKCQ9UQB9 309 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 H0YAE9 185 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 DPYSL4O14531 572 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 JRKO75564 520 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 DNAJB5O75953 348 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 TGM1P22735 817 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 EEF1B2P24534 225 aaKnown RBP10.89□□□□□ -0.67
UPF3A-212ENST00000619079 CYP2F1P24903 491 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 CCT8P50990 548 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 TRIM32Q13049 653 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 SCYL2Q6P3W7 929 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 USP51Q70EK9 711 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 TFAP2DQ7Z6R9 452 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.89□□□□□ -0.67
UPF3A-212ENST00000619079 HTR3CQ8WXA8 447 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 VMP1Q96GC9 406 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 FBXL20Q96IG2 436 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 ZBTB45Q96K62 511 aaPredicted RBP10.89□□□□□ -0.67
UPF3A-212ENST00000619079 TARS2Q9BW92 718 aaKnown RBP10.89□□□□□ -0.67
UPF3A-212ENST00000619079 LRRC40Q9H9A6 602 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 SYBUQ9NX95 663 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 RBMX2Q9Y388 322 aaKnown RBP10.89□□□□□ -0.67
UPF3A-212ENST00000619079 SDHDO14521 159 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 RGS13O14921 159 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 MSI1O43347 362 aaKnown RBP10.89□□□□□ -0.67
UPF3A-212ENST00000619079 NPHS1O60500 1241 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 STBD1O95210 358 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 MAP3K6O95382 1288 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 KRT75O95678 551 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 GPIP06744 558 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 PSAPP07602 524 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 RPS9P46781 194 aaKnown RBP10.89□□□□□ -0.67
UPF3A-212ENST00000619079 IRF9Q00978 393 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 SPATS1Q496A3 300 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 PERM1Q5SV97 790 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 MORN1Q5T089 497 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 C8orf82Q6P1X6 216 aaPredicted RBP10.89□□□□□ -0.67
UPF3A-212ENST00000619079 KCNT2Q6UVM3 1135 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 PLEKHG7Q6ZR37 379 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 KDM1BQ8NB78 822 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 CXorf38Q8TB03 319 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 BCL7BQ9BQE9 202 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 LRRC4Q9HBW1 653 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 AKIP1Q9NQ31 210 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 TBC1D13Q9NVG8 400 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 GMIPQ9P107 970 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 TANC1Q9C0D5 1861 aa10.89□□□□□ -0.67
UPF3A-212ENST00000619079 LRRIQ4A6NIV6 560 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 C16orf96A6NNT2 1141 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 BBIP1A8MTZ0 92 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 M0QYV0 167 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 UBDO15205 165 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 NRP2O60462 931 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 MGEA5O60502 916 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 ABCB7O75027 752 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 ATP6V1B2P21281 511 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 SLC7A2P52569 658 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 EMC2Q15006 297 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 PGM5Q15124 567 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 PSMD5Q16401 504 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 CDO1Q16878 200 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 C15orf59Q2T9L4 293 aaPredicted RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 ANO4Q32M45 955 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 AGKQ53H12 422 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms