RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ALOX12P18054 663 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 GALNT3Q14435 633 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 VWA5B1Q5TIE3 1220 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 SLC26A9Q7LBE3 791 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 DENND1CQ8IV53 801 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 TOP6BLQ8N6T0 577 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 COQ4Q9Y3A0 265 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 MSI1O43347 362 aaKnown RBP14.09□□□□□ -0.15
CPSF1-212ENST00000616140 NRP2O60462 931 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 PAGE1O75459 146 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 HDCP19113 662 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 LPOP22079 712 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-212ENST00000616140 KLRC2P26717 231 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 RPL9P32969 192 aaKnown RBP14.09□□□□□ -0.15
CPSF1-212ENST00000616140 ARL2P36404 184 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 ROR2Q01974 943 aaKnown RBP14.09□□□□□ -0.15
CPSF1-212ENST00000616140 TNK2Q07912 1038 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 MTSS1LQ765P7 747 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 VN1R5Q7Z5H4 357 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 GPR142Q7Z601 462 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 ADAMTSL2Q86TH1 951 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 GPR152Q8TDT2 470 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 PPP3R2Q96LZ3 170 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 C7orf26Q96N11 449 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 REXO4Q9GZR2 422 aaKnown RBP14.09□□□□□ -0.15
CPSF1-212ENST00000616140 HMG20AQ9NP66 347 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 DNMT3LQ9UJW3 386 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 BCLAF3A2AJT9 711 aaKnown RBP14.09□□□□□ -0.15
CPSF1-212ENST00000616140 HOXC6P09630 235 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 POLD2P49005 469 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 DGUOKQ16854 277 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 INSCQ1MX18 579 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 INO80DQ53TQ3 878 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-212ENST00000616140 AFTPHQ6ULP2 937 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 ZDHHC24Q6UX98 284 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 USP45Q70EL2 814 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 CHMP1BQ7LBR1 199 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 ZNF605Q86T29 641 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 CUZD1Q86UP6 607 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 TRMOQ9BU70 441 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 PSMD13Q9UNM6 376 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 COPG1Q9Y678 874 aaKnown RBP14.09□□□□□ -0.15
CPSF1-212ENST00000616140 GRIK3Q13003 919 aa14.08□□□□□ -0.15
CPSF1-212ENST00000616140 ITGADQ13349 1161 aa14.08□□□□□ -0.15
CPSF1-212ENST00000616140 PHKG1Q16816 387 aa14.08□□□□□ -0.15
CPSF1-212ENST00000616140 ALFQ53S48 1182 aa14.08□□□□□ -0.15
CPSF1-212ENST00000616140 ARL13AQ5H913 290 aaPredicted RBP14.08□□□□□ -0.15
CPSF1-212ENST00000616140 ABRAXAS1Q6UWZ7 409 aa14.08□□□□□ -0.15
CPSF1-212ENST00000616140 RBM44Q6ZP01 1051 aaKnown RBP14.08□□□□□ -0.15
CPSF1-212ENST00000616140 OTOP3Q7RTS5 596 aa14.08□□□□□ -0.15
CPSF1-212ENST00000616140 C19orf18Q8NEA5 215 aa14.08□□□□□ -0.15
CPSF1-212ENST00000616140 GRIN3AQ8TCU5 1115 aa14.08□□□□□ -0.15
CPSF1-212ENST00000616140 GTF2A1LQ9UNN4 478 aa14.08□□□□□ -0.15
CPSF1-212ENST00000616140 SLC12A4Q9UP95 1085 aa14.08□□□□□ -0.15
CPSF1-212ENST00000616140 IPPQ9Y573 584 aa14.08□□□□□ -0.15
CPSF1-212ENST00000616140 SIN3BO75182 1162 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 WFS1O76024 890 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 CLTBP09497 229 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 HPGDP15428 266 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 PSEN1P49768 467 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 LSM3P62310 102 aaKnown RBP14.08□□□□□ -0.16
CPSF1-212ENST00000616140 MFSD4BQ5TF39 518 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 MON1AQ86VX9 555 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 CYP4X1Q8N118 509 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 OR4L1Q8NH43 312 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 STK39Q9UEW8 545 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 ENOPH1Q9UHY7 261 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 PIPSLA2A3N6 862 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 FGF1P05230 155 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 ATP6V0D1P61421 351 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 TRAF3Q13114 568 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 DLG2Q15700 870 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 PABPC1LQ4VXU2 614 aaKnown RBP14.08□□□□□ -0.16
CPSF1-212ENST00000616140 BRMS1LQ5PSV4 323 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 DPP10Q8N608 796 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 EMID1Q96A84 441 aaPredicted RBP14.08□□□□□ -0.16
CPSF1-212ENST00000616140 TCF12Q99081 682 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 NIFKQ9BYG3 293 aaKnown RBP14.08□□□□□ -0.16
CPSF1-212ENST00000616140 ZDHHC6Q9H6R6 413 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 ARHGEF4Q9NR80 690 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 RCOR3Q9P2K3 495 aaPredicted RBP14.08□□□□□ -0.16
CPSF1-212ENST00000616140 AP3M1Q9Y2T2 418 aa14.08□□□□□ -0.16
CPSF1-212ENST00000616140 UNGP13051 313 aaPredicted RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 EIF2B2P49770 351 aaKnown RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 SLC5A9Q2M3M2 681 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 SETMARQ53H47 684 aaPredicted RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 NOMO2Q5JPE7 1267 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 SAPCD2Q86UD0 394 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 ZNF513Q8N8E2 541 aaPredicted RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 FAM47BQ8NA70 645 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 OR7A2PQ8NGA2 310 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 CLEC4DQ8WXI8 215 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 PROX1Q92786 737 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 BBS4Q96RK4 519 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 NTPCRQ9BSD7 190 aaKnown RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 SDCBP2Q9H190 292 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 PRKAG3Q9UGI9 489 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 SNX6Q9UNH7 406 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 SF3B1O75533 1304 aaKnown RBP eCLIP14.07□□□□□ -0.167e-7■■■■■ 81.3
CPSF1-212ENST00000616140 MFN2O95140 757 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms