RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ZBTB33Q86T24 672 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 KCTD4Q8WVF5 259 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 AGAP4Q96P64 663 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 MECRQ9BV79 373 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 ZNF302Q9NR11 478 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 PLSCR3Q9NRY6 295 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 PAQR5Q9NXK6 330 aaPredicted RBP10.3□□□□□ -0.76
VPS39-214ENST00000614932 NFASCO94856 1347 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 C19orf81C9J6K1 198 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 DNALI1O14645 258 aaPredicted RBP10.3□□□□□ -0.76
VPS39-214ENST00000614932 TOR1AO14656 332 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 NOS1APO75052 506 aaPredicted RBP10.3□□□□□ -0.76
VPS39-214ENST00000614932 ZMPSTE24O75844 475 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 SCO1O75880 301 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 MYL4P12829 197 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 DNAJB2P25686 324 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 GPX6P59796 221 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 PLA2G4EQ3MJ16 856 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 KRT39Q6A163 491 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 C16orf89Q6UX73 402 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 CCDC103Q8IW40 242 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 LRRC71Q8N4P6 559 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 TP53I13Q8NBR0 393 aaPredicted RBP10.3□□□□□ -0.76
VPS39-214ENST00000614932 TMEM35BQ8NCS4 154 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 CMASQ8NFW8 434 aaPredicted RBP10.3□□□□□ -0.76
VPS39-214ENST00000614932 ZNF516Q92618 1163 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 MARC2Q969Z3 335 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 NRBF2Q96F24 287 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 KLHL32Q96NJ5 620 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 ZC4H2Q9NQZ6 224 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 FBXO8Q9NRD0 319 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 RAB20Q9NX57 234 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 VPS28Q9UK41 221 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 PCDHGA10Q9Y5H3 936 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 PTPRJQ12913 1337 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 KIAA1217Q5T5P2 1943 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 CCDC195A0A1B0GUA6 201 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 COPEO14579 308 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SNNO75324 88 aaPredicted RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 BCAS2O75934 225 aaPredicted RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 CD4P01730 458 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 GNAO1P09471 354 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SUPT20HL2P0C7V6 817 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 BMP4P12644 408 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 KLRC2P26717 231 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 CD40LGP29965 261 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 OSTNP61366 133 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 PON2Q15165 354 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 PPP1R3AQ16821 1122 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SUPT20HL1Q3ZLR7 823 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 TOR2AQ5JU69 321 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 BRMS1LQ5PSV4 323 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 CES4AQ5XG92 561 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 ZNF544Q6NX49 715 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 USP37Q86T82 979 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 BPIFB6Q8NFQ5 453 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 PJA1Q8NG27 643 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 PNPT1Q8TCS8 783 aaKnown RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 TRAPPC12Q8WVT3 735 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 CPA5Q8WXQ8 436 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SNX19Q92543 992 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SERAC1Q96JX3 654 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SGIP1Q9BQI5 828 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 APOL6Q9BWW8 343 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 HAPLN2Q9GZV7 340 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 MAP3K20Q9NYL2 800 aaKnown RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 TAS2R7Q9NYW3 318 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.29□□□□□ -0.76
VPS39-214ENST00000614932 SIRPGQ9P1W8 387 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 XPO7Q9UIA9 1087 aaKnown RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 DIMT1Q9UNQ2 313 aaKnown RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 BRCA2P51587 3418 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SPATA31C2B4DYI2 1134 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 NCAM2O15394 837 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SERPINI2O75830 405 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 DGAT1O75907 488 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 CFHP08603 1231 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 JUNBP17275 347 aaPredicted RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 UBA1P22314 1058 aaKnown RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 FGFR3P22607 806 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 CSTF2P33240 577 aaKnown RBP eCLIP10.29□□□□□ -0.76
VPS39-214ENST00000614932 SERPINH1P50454 418 aaKnown RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 MS4A2Q01362 244 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 CYP24A1Q07973 514 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 ACAP2Q15057 778 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 PIGGQ5H8A4 983 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 PAGE2BQ5JRK9 111 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 PDPK2PQ6A1A2 396 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 GTF2IRD2BQ6EKJ0 949 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 ZNF704Q6ZNC4 412 aaPredicted RBP10.29□□□□□ -0.76
VPS39-214ENST00000614932 ZBTB49Q6ZSB9 765 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 ZNF438Q7Z4V0 828 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SLCO6A1Q86UG4 719 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 GTF2IRD2Q86UP8 949 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 GATAD2AQ86YP4 633 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 HID1Q8IV36 788 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 NDUFAF2Q8N183 169 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 FBXL13Q8NEE6 735 aa10.29□□□□□ -0.76
VPS39-214ENST00000614932 SLC44A1Q8WWI5 657 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms