RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 NAP1L1P55209 391 aaKnown RBP11.25□□□□□ -0.61
VRK3-210ENST00000596121 CLDN2P57739 230 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 AP1S1P61966 158 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 RPS21P63220 83 aaKnown RBP11.25□□□□□ -0.61
VRK3-210ENST00000596121 CCZ1BP86790 482 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 CCZ1P86791 482 aaPredicted RBP11.25□□□□□ -0.61
VRK3-210ENST00000596121 DSC2Q02487 901 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 RAD51Q06609 339 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 PPIDQ08752 370 aaKnown RBP11.25□□□□□ -0.61
VRK3-210ENST00000596121 TRAF2Q12933 501 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 ZBTB17Q13105 803 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 HNRNPDQ14103 355 aaKnown RBP11.25□□□□□ -0.61
VRK3-210ENST00000596121 ZNF235Q14590 738 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 SHBQ15464 509 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 TMEM52BQ4KMG9 183 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 MARC1Q5VT66 337 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 KAZNQ674X7 775 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 GCNT7Q6ZNI0 430 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 NT5DC3Q86UY8 548 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 RCOR2Q8IZ40 523 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 KIAA1524Q8TCG1 905 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 FATE1Q969F0 183 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 RAB7BQ96AH8 199 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 FEM1CQ96JP0 617 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 BMFQ96LC9 184 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 HEMGNQ9BXL5 484 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 SLC17A9Q9BYT1 436 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 GAREM1Q9H706 876 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 AASDHPPTQ9NRN7 309 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 DNAAF2Q9NVR5 837 aaKnown RBP11.25□□□□□ -0.61
VRK3-210ENST00000596121 RBM22Q9NW64 420 aaKnown RBP eCLIP11.25□□□□□ -0.61
VRK3-210ENST00000596121 PCDHA3Q9Y5H8 950 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 CAPN6Q9Y6Q1 641 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 A0A0U1RQS6 177 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 POM121BA6NF01 834 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 UPK3BL1B0FP48 263 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 UPK3BL2E5RIL1 263 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 KCNK1O00180 336 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 TLR4O00206 839 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 RIOK3O14730 519 aaKnown RBP11.24□□□□□ -0.61
VRK3-210ENST00000596121 DDX3YO15523 660 aaKnown RBP11.24□□□□□ -0.61
VRK3-210ENST00000596121 TSPAN6O43657 245 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 ZRANB2O95218 330 aaKnown RBP eCLIP11.24□□□□□ -0.61
VRK3-210ENST00000596121 JCHAINP01591 159 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 HLA-DQB2P05538 268 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 MMP2P08253 660 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 PYGMP11217 842 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 CCNB1P14635 433 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 GM2AP17900 193 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 CD38P28907 300 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 HSPA9P38646 679 aaKnown RBP11.24□□□□□ -0.61
VRK3-210ENST00000596121 NXPH1P58417 271 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 BCL2L1Q07817 233 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 CCDC15Q0P6D6 951 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 KIF5AQ12840 1032 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 RALGDSQ12967 914 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 ZNF423Q2M1K9 1284 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 SETMARQ53H47 684 aaPredicted RBP11.24□□□□□ -0.61
VRK3-210ENST00000596121 TPRG1LQ5T0D9 272 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 ALG1LQ6GMV1 187 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 KIAA1161Q6NSJ0 714 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 PIP4P1Q86T03 277 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 CCDC13Q8IYE1 715 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.24□□□□□ -0.61
VRK3-210ENST00000596121 CCNYQ8ND76 341 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 EXD1Q8NHP7 514 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.24□□□□□ -0.61
VRK3-210ENST00000596121 HDAC11Q96DB2 347 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 CAMK1GQ96NX5 476 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 IL12RB2Q99665 862 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 SEMA3CQ99985 751 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 WRAP53Q9BUR4 548 aaKnown RBP11.24□□□□□ -0.61
VRK3-210ENST00000596121 MAK16Q9BXY0 300 aaKnown RBP11.24□□□□□ -0.61
VRK3-210ENST00000596121 CEP41Q9BYV8 373 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 ZDHHC5Q9C0B5 715 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 ATP13A3Q9H7F0 1226 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 SCUBE2Q9NQ36 999 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 PACSIN2Q9UNF0 486 aaPredicted RBP11.24□□□□□ -0.61
VRK3-210ENST00000596121 DMTF1Q9Y222 760 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 ATP8A1Q9Y2Q0 1164 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 COQ6Q9Y2Z9 468 aa11.24□□□□□ -0.61
VRK3-210ENST00000596121 PCNX2A6NKB5 2137 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 GOLGA6L3A6NEY3 463 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 A8MX80 341 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 PRAMEF26H0Y7S4 382 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 NEMP1O14524 444 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 ARHGAP6O43182 974 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 OPHN1O60890 802 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 FTCDO95954 541 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 PRLP01236 227 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 PDHA1P08559 390 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 MX2P20592 715 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 SDHBP21912 280 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 SERPINA4P29622 427 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 NUDT1P36639 197 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 ATXN3P54252 364 aaPredicted RBP11.23□□□□□ -0.61
VRK3-210ENST00000596121 FAM193AP78312 1265 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 IFI35P80217 286 aaPredicted RBP11.23□□□□□ -0.61
VRK3-210ENST00000596121 IL9RQ01113 521 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 GRM3Q14832 879 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms