RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 A0A1W2PQM1 296 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 K7ENP7 123 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 NTN3O00634 580 aaPredicted RBP11.75□□□□□ -0.53
LIG3-207ENST00000586119 BUB1BO60566 1050 aaPredicted RBP11.75□□□□□ -0.53
LIG3-207ENST00000586119 RAMP2O60895 175 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 SDC4P31431 198 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 CDR2Q01850 454 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 PTK2BQ14289 1009 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 ALG11Q2TAA5 492 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 ARL13BQ3SXY8 428 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 ACBD5Q5T8D3 534 aaPredicted RBP11.75□□□□□ -0.53
LIG3-207ENST00000586119 INO80CQ6PI98 192 aaPredicted RBP11.75□□□□□ -0.53
LIG3-207ENST00000586119 WDR59Q6PJI9 974 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 IGF2-ASQ6U949 168 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 ENPP7Q6UWV6 458 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 ZSWIM9Q86XI8 627 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 SDR16C5Q8N3Y7 309 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 KYQ8NBH2 561 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 WDR36Q8NI36 951 aaKnown RBP11.75□□□□□ -0.53
LIG3-207ENST00000586119 PCDH19Q8TAB3 1148 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 CXorf40AQ8TE69 158 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 BTN2A2Q8WVV5 523 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 CCDC74AQ96AQ1 378 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 HMCESQ96FZ2 354 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 SLC13A1Q9BZW2 595 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 VPS16Q9H269 839 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 EVA1BQ9NVM1 165 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 LHX3Q9UBR4 397 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 HPCAL4Q9UM19 191 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 OR1A2Q9Y585 309 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 PCDHGA8Q9Y5G5 932 aa11.75□□□□□ -0.53
LIG3-207ENST00000586119 ASH1LQ9NR48 2969 aaKnown RBP11.74□□□□□ -0.53
LIG3-207ENST00000586119 B8ZZF3 427 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 RASA4BC9J798 803 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 RASA4O43374 803 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 NOBOXO60393 691 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 UNGP13051 313 aaPredicted RBP11.74□□□□□ -0.53
LIG3-207ENST00000586119 ERCC5P28715 1186 aaPredicted RBP11.74□□□□□ -0.53
LIG3-207ENST00000586119 UCNP55089 124 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 POLR2FP61218 127 aaKnown RBP11.74□□□□□ -0.53
LIG3-207ENST00000586119 RHOAP61586 193 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 YPEL5P62699 121 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 SPIDRQ14159 915 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 INPP5AQ14642 412 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 STX1AQ16623 288 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 TMEM52BQ4KMG9 183 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 TCP11X2Q5H9J9 407 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 SMYD5Q6GMV2 418 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 SCYL2Q6P3W7 929 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 MACC1Q6ZN28 852 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 CCDC81Q6ZN84 652 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 STRADAQ7RTN6 431 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 FAM114A1Q8IWE2 563 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 EXD3Q8N9H8 876 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 PLA2G15Q8NCC3 412 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 TPCN2Q8NHX9 752 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 SNRNP27Q8WVK2 155 aaKnown RBP11.74□□□□□ -0.53
LIG3-207ENST00000586119 COL26A1Q96A83 441 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 WBP1Q96G27 269 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 NSMCE3Q96MG7 304 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 GDAP1L1Q96MZ0 367 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 APOOQ9BUR5 198 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 OSBPL1AQ9BXW6 950 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 EDEM3Q9BZQ6 932 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 EPB41L5Q9HCM4 733 aa11.74□□□□□ -0.53
LIG3-207ENST00000586119 ATXN7L1Q9ULK2 861 aaPredicted RBP11.74□□□□□ -0.53
LIG3-207ENST00000586119 CCDC187A0A096LP49 1063 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 J3KR12 359 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 CCP110O43303 1012 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 CREB3O43889 395 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 TCEA3O75764 348 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 IGSF6O95976 241 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 PCCBP05166 539 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 KRT3P12035 628 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 C6P13671 934 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 CTSEP14091 401 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 GPD1P21695 349 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 EPHB2P29323 1055 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 SLC5A2P31639 672 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 UGT1A5P35504 534 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 SOX5P35711 763 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 ETFBP38117 255 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 PTPN9P43378 593 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 RGRP47804 291 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 RPIAP49247 311 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 HK3P52790 923 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 JAM2P57087 298 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 LRRC14Q15048 493 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 LINC00303Q3SY05 128 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 ESRP1Q6NXG1 681 aaKnown RBP11.73□□□□□ -0.53
LIG3-207ENST00000586119 SLFN11Q7Z7L1 901 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 CLEC14AQ86T13 490 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 ZSCAN30Q86W11 494 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 CAMK1DQ8IU85 385 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 PELI3Q8N2H9 469 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 FBXO39Q8N4B4 442 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 RTL3Q8N8U3 475 aaKnown RBP11.73□□□□□ -0.53
LIG3-207ENST00000586119 Q8N9G6 341 aaPredicted RBP11.73□□□□□ -0.53
LIG3-207ENST00000586119 MSANTD4Q8NCY6 345 aa11.73□□□□□ -0.53
LIG3-207ENST00000586119 CCL4L1Q8NHW4 92 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms