RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 PPP2R5BQ15173 497 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 SHBQ15464 509 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 SOWAHAQ2M3V2 549 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 TDRD12Q587J7 1177 aaKnown RBP4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 LRRC8EQ6NSJ5 796 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 PDXDC1Q6P996 788 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 H1FNTQ75WM6 255 aaPredicted RBP4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 SFTPA2Q8IWL1 248 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 CCDC105Q8IYK2 499 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 IQCF1Q8N6M8 205 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 PAF1Q8N7H5 531 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 NFKBIDQ8NI38 313 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 TRIB2Q92519 343 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 KLHL29Q96CT2 875 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 THOC3Q96J01 351 aaKnown RBP4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 ZNF479Q96JC4 524 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 PPM1MQ96MI6 270 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 BBS4Q96RK4 519 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 MXRA8Q9BRK3 442 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 HIPK2Q9H2X6 1198 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 SMYD2Q9NRG4 433 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 SARDHQ9UL12 918 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 NAALADL1Q9UQQ1 740 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 TMEM98Q9Y2Y6 226 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 FAM96BQ9Y3D0 163 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 A3GALT2U3KPV4 340 aa4.72□□□□□ -1.65
SMCHD1-204ENST00000581226 IGHV4-28A0A0C4DH34 117 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 A0A0U1RQF3 1178 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 LACTBL1A8MY62 500 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 KCNAB3O43448 404 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 GLUD1P00367 558 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 PRSS2P07478 247 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 NGFRP08138 427 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 T-ENOLP0DO92 83 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 ABCD1P33897 745 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 ARL1P40616 181 aaPredicted RBP4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 GLUD2P49448 558 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 CASP6P55212 293 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 TBX2Q13207 712 aaPredicted RBP4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 HIST2H2ACQ16777 129 aaPredicted RBP4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 TYW3Q6IPR3 259 aaKnown RBP4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 FJX1Q86VR8 437 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 DHX40Q8IX18 779 aaKnown RBP4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 ZCCHC9Q8N567 271 aaKnown RBP4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 ARRDC2Q8TBH0 407 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 ELP5Q8TE02 316 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 NEUROG1Q92886 237 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 SNAPC3Q92966 411 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 SAAL1Q96ER3 474 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 TXNDC15Q96J42 360 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 MARK4Q96L34 752 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 SLC26A6Q9BXS9 759 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 SEZ6LQ9BYH1 1024 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 OR6C3Q9NZP0 311 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 WNT16Q9UBV4 365 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 PAM16Q9Y3D7 125 aa4.71□□□□□ -1.66
SMCHD1-204ENST00000581226 IGKV2D-30A0A075B6S6 120 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 VNN2O95498 520 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 MT-CYBP00156 380 aaPredicted RBP4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 TFP02787 698 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 C21orf33P30042 268 aaPredicted RBP4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 ELF1P32519 619 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 KRT9P35527 623 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 RPL3P39023 403 aaKnown RBP4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 CTCFP49711 727 aaPredicted RBP4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 GNAQP50148 359 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 EGR4Q05215 589 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 LTBQ06643 244 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 TRAF2Q12933 501 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 RNPS1Q15287 305 aaKnown RBP4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 TXNDC8Q6A555 127 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 C8orf82Q6P1X6 216 aaPredicted RBP4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 NOXA1Q86UR1 476 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 TDRPQ86YL5 185 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 PHF21BQ96EK2 531 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 H2AFJQ9BTM1 129 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 A4GNTQ9UNA3 340 aa4.7□□□□□ -1.66
SMCHD1-204ENST00000581226 A0A1W2PPH5 198 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 A0A1W2PQM1 296 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 TTC36A6NLP5 189 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 NPIPB11E5RHQ5 1161 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 J3KR12 359 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 TIMM23O14925 209 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 LDLRAD4O15165 306 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 BCAT2O15382 392 aaPredicted RBP4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 TNFSF14O43557 240 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 KLK8O60259 260 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 SERPINI2O75830 405 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 NDUFB4O95168 129 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 ETFAP13804 333 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 PAX3P23760 479 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 EPHA8P29322 1005 aaPredicted RBP4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 CCKARP32238 428 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 PIGAP37287 484 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 MXI1P50539 228 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 POU5F1BQ06416 359 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 FOXD4Q12950 439 aaPredicted RBP4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 GRIK3Q13003 919 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 PLCB4Q15147 1175 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 SHFQ7M4L6 423 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms