RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 ARIH1Q9Y4X5 557 aaPredicted RBP24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 PCDHB9Q9Y5E1 797 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 MAD1L1Q9Y6D9 718 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 TEX264Q9Y6I9 313 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 STON1Q9Y6Q2 735 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 SDR42E2A6NKP2 422 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 SIN3BO75182 1162 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 CPP00450 1065 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 CHRM1P11229 460 aaPredicted RBP24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 HNRNPLP14866 589 aaKnown RBP eCLIP24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 HLA-DPA1P20036 260 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 DRD1P21728 446 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 RAD51Q06609 339 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 MLF2Q15773 248 aaPredicted RBP24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 C2orf27AQ580R0 203 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 C9orf64Q5T6V5 341 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 CASC4Q6P4E1 433 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 RELL1Q8IUW5 271 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 PYROXD1Q8WU10 500 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 UBLCP1Q8WVY7 318 aaPredicted RBP24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 MSANTD3Q96H12 275 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 TUBGCP5Q96RT8 1024 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 HEPHQ9BQS7 1158 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 TRIM56Q9BRZ2 755 aaKnown RBP24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 NINJ2Q9NZG7 142 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 BFARQ9NZS9 450 aa24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 DYNC1LI1Q9Y6G9 523 aaKnown RBP24.24■■□□□ 1.47
ATPAF1-213ENST00000574428 TRAFD1O14545 582 aaPredicted RBP24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 SOCS5O75159 536 aa24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 UGT2B4P06133 528 aa24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 EPHX1P07099 455 aa24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 CBLBQ13191 982 aa24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 POU6F1Q14863 301 aa24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 UAP1Q16222 522 aaPredicted RBP24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 KYNUQ16719 465 aa24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 CCDC38Q502W7 563 aa24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 PAF1Q8N7H5 531 aa24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 RMDN1Q96DB5 314 aa24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 CPEB1Q9BZB8 566 aaKnown RBP24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 WASF2Q9Y6W5 498 aa24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 F5P12259 2224 aa24.23■■□□□ 1.47
ATPAF1-213ENST00000574428 AP3B1O00203 1094 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 HTRA2O43464 458 aaPredicted RBP24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 FZD6O60353 706 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 LEFTY1O75610 366 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 PGLSO95336 258 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 FGF1P05230 155 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 CTSLP07711 333 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 HSD17B3P37058 310 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 NPY2RP49146 381 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 ARMC12Q5T9G4 340 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 CAPN12Q6ZSI9 719 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 STK40Q8N2I9 435 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 MREGQ8N565 214 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 SMIM14Q96QK8 99 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 ADGRE3Q9BY15 652 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 IL36AQ9UHA7 158 aa24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 TCF20Q9UGU0 1960 aaKnown RBP24.22■■□□□ 1.47
ATPAF1-213ENST00000574428 ACSL3O95573 720 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 PRKCGP05129 697 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 PIRTP0C851 137 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 ENPP2Q13822 863 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 ARSIQ5FYB1 569 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 TRMT10CQ7L0Y3 403 aaKnown RBP24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 LRRC39Q96DD0 335 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 STAMBPL1Q96FJ0 436 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 CFAP36Q96G28 342 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 EBNA1BP2Q99848 306 aaKnown RBP24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 IL22Q9GZX6 179 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 EPB41L4BQ9H329 900 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 SUV39H2Q9H5I1 410 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 NDRG2Q9UN36 371 aaKnown RBP24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 GRM3Q14832 879 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 GDPD4Q6W3E5 623 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 ZSWIM9Q86XI8 627 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 ATXN2LQ8WWM7 1075 aaKnown RBP24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 ARHGEF3Q9NR81 526 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 SAMD15Q9P1V8 674 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 ZC3H7BQ9UGR2 993 aaKnown RBP24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 MYLKQ15746 1914 aa24.21■■□□□ 1.47
ATPAF1-213ENST00000574428 NPC1O15118 1278 aa24.2■■□□□ 1.46
ATPAF1-213ENST00000574428 SLC8A1P32418 973 aa24.2■■□□□ 1.46
ATPAF1-213ENST00000574428 CBX1P83916 185 aa24.2■■□□□ 1.46
ATPAF1-213ENST00000574428 ZNF641Q96N77 438 aaPredicted RBP24.2■■□□□ 1.46
ATPAF1-213ENST00000574428 KLHL32Q96NJ5 620 aa24.2■■□□□ 1.46
ATPAF1-213ENST00000574428 ASB2Q96Q27 587 aa24.2■■□□□ 1.46
ATPAF1-213ENST00000574428 PABPC3Q9H361 631 aaKnown RBP24.2■■□□□ 1.46
ATPAF1-213ENST00000574428 LRRC4CQ9HCJ2 640 aa24.2■■□□□ 1.46
ATPAF1-213ENST00000574428 PRSS16Q9NQE7 514 aa24.2■■□□□ 1.46
ATPAF1-213ENST00000574428 SUN2Q9UH99 717 aa24.2■■□□□ 1.46
ATPAF1-213ENST00000574428 RIPK2O43353 540 aa24.19■■□□□ 1.46
ATPAF1-213ENST00000574428 TTC4O95801 387 aa24.19■■□□□ 1.46
ATPAF1-213ENST00000574428 EPHB1P54762 984 aa24.19■■□□□ 1.46
ATPAF1-213ENST00000574428 MSLNQ13421 630 aaPredicted RBP24.19■■□□□ 1.46
ATPAF1-213ENST00000574428 SEPT6Q14141 434 aa24.19■■□□□ 1.46
ATPAF1-213ENST00000574428 ELAVL3Q14576 367 aaKnown RBP24.19■■□□□ 1.46
ATPAF1-213ENST00000574428 PTPRRQ15256 657 aa24.19■■□□□ 1.46
ATPAF1-213ENST00000574428 E2F5Q15329 346 aa24.19■■□□□ 1.46
ATPAF1-213ENST00000574428 QPCTQ16769 361 aa24.19■■□□□ 1.46
ATPAF1-213ENST00000574428 POM121L1PQ3SYA9 428 aa24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms