RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ZNF670Q9BS34 389 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 SEPT3Q9UH03 358 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 KLK13Q9UKR3 277 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 PCOLCE2Q9UKZ9 415 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 BTBD3Q9Y2F9 522 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 HYOU1Q9Y4L1 999 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 PCDHA13Q9Y5I0 950 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 PLXNA2O75051 1894 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 TSPAN11A1L157 253 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 MFSD11O43934 449 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 DFNA5O60443 496 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 MMP20O60882 483 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 THEGLP0DJG4 465 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 SERPINB6P35237 376 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 CCT8P50990 548 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 SCNN1BP51168 640 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 GRM3Q14832 879 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 SUZ12Q15022 739 aaKnown RBP15.18■□□□□ 0.02
VPS39-210ENST00000568357 UGP2Q16851 508 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 GCNT7Q6ZNI0 430 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 GATAD2AQ86YP4 633 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 MAP7D3Q8IWC1 876 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 CCDC170Q8IYT3 715 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 ATPAF2Q8N5M1 289 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 PANX2Q96RD6 677 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 TUBGCP5Q96RT8 1024 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 KLF6Q99612 283 aaPredicted RBP15.18■□□□□ 0.02
VPS39-210ENST00000568357 ERVMER34-1Q9H9K5 563 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 HS3ST3A1Q9Y663 406 aa15.18■□□□□ 0.02
VPS39-210ENST00000568357 KNL1Q8NG31 2342 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 POM121BA6NF01 834 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 SOWAHDA6NJG2 315 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 C3orf70A6NLC5 250 aaPredicted RBP15.17■□□□□ 0.02
VPS39-210ENST00000568357 MAP3K6O95382 1288 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 CR2P20023 1033 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 FECHP22830 423 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 RENBPP51606 427 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 SEMG2Q02383 582 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 GBE1Q04446 702 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 GALNT2Q10471 571 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 SLC10A2Q12908 348 aaPredicted RBP15.17■□□□□ 0.02
VPS39-210ENST00000568357 BNIP3Q12983 259 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 SGCGQ13326 291 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 HNRNPDQ14103 355 aaKnown RBP15.17■□□□□ 0.02
VPS39-210ENST00000568357 TMEM52BQ4KMG9 183 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 ZFYVE27Q5T4F4 411 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 C19orf48Q6RUI8 117 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 ABI3BPQ7Z7G0 1075 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 OR13H1Q8NG92 308 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 BAHD1Q8TBE0 780 aaPredicted RBP15.17■□□□□ 0.02
VPS39-210ENST00000568357 SAP25Q8TEE9 199 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 LRRN4Q8WUT4 740 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 ASB12Q8WXK4 309 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 CENPTQ96BT3 561 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 LENG8Q96PV6 779 aaPredicted RBP15.17■□□□□ 0.02
VPS39-210ENST00000568357 RNF157Q96PX1 679 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 WRAP53Q9BUR4 548 aaKnown RBP15.17■□□□□ 0.02
VPS39-210ENST00000568357 ATP13A3Q9H7F0 1226 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 CAAP1Q9H8G2 361 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 PCDH12Q9NPG4 1184 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 NEUROG3Q9Y4Z2 214 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 PCDHB9Q9Y5E1 797 aa15.17■□□□□ 0.02
VPS39-210ENST00000568357 EPN1Q9Y6I3 576 aaPredicted RBP15.17■□□□□ 0.02
VPS39-210ENST00000568357 LRRD1A4D1F6 860 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 TRAFD1O14545 582 aaPredicted RBP15.16■□□□□ 0.02
VPS39-210ENST00000568357 RIOK3O14730 519 aaKnown RBP15.16■□□□□ 0.02
VPS39-210ENST00000568357 FLRT2O43155 660 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 MAGEC1O60732 1142 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 PRKCGP05129 697 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 COMTP21964 271 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 SERPINA4P29622 427 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 GARSP41250 739 aaKnown RBP15.16■□□□□ 0.02
VPS39-210ENST00000568357 NOP2P46087 812 aaKnown RBP15.16■□□□□ 0.02
VPS39-210ENST00000568357 RXRGP48443 463 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 SUOXP51687 545 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 MAXP61244 160 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 BCL2L1Q07817 233 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 ZNF235Q14590 738 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 SPA17Q15506 151 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 MARC1Q5VT66 337 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 LRRC38Q5VT99 294 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 BRAT1Q6PJG6 821 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 KDM7AQ6ZMT4 941 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 Q6ZSR6 202 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 LRRC49Q8IUZ0 686 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 SLC22A18ASQ8N1D0 253 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 ECHDC3Q96DC8 303 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 GOLPH3Q9H4A6 298 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 NOD2Q9HC29 1040 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 PCDHGC4Q9Y5F7 938 aa15.16■□□□□ 0.02
VPS39-210ENST00000568357 RCCD1A6NED2 376 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 TNNT1P13805 278 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 XPAP23025 273 aaPredicted RBP15.15■□□□□ 0.02
VPS39-210ENST00000568357 CYLC1P35663 651 aaPredicted RBP15.15■□□□□ 0.02
VPS39-210ENST00000568357 SLC1A1P43005 524 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 MMP13P45452 471 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 ARRB1P49407 418 aaPredicted RBP15.15■□□□□ 0.02
VPS39-210ENST00000568357 HADHBP55084 474 aaKnown RBP15.15■□□□□ 0.02
VPS39-210ENST00000568357 AP1S1P61966 158 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 RAD9BQ6WBX8 426 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms