RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 SUDS3Q9H7L9 328 aaPredicted RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 MANSC1Q9H8J5 431 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 SNX15Q9NRS6 342 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 ABCB8Q9NUT2 735 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 YBX2Q9Y2T7 364 aaKnown RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 PLLPQ9Y342 182 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 RAI2Q9Y5P3 530 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 GBF1Q92538 1859 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 OR51F1A6NGY5 319 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 MOSPD3O75425 235 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 NDST3O95803 873 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 CD160O95971 181 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 AHSGP02765 367 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 FGF1P05230 155 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 BGNP21810 368 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 SP100P23497 879 aaPredicted RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 ARNTP27540 789 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 WEE1P30291 646 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 SLC8A1P32418 973 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 SLC1A2P43004 574 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 ARCN1P48444 511 aaKnown RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 NRIP1P48552 1158 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 SERPINB4P48594 390 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 EPHB1P54762 984 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 USP10Q14694 798 aaKnown RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 GRM3Q14832 879 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 ACCSLQ4AC99 568 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 N4BP2L1Q5TBK1 243 aaPredicted RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 ZNF783Q6ZMS7 281 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 CPXM2Q8N436 756 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 NAT16Q8N8M0 369 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 CCDC197Q8NCU1 140 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 ACVR1CQ8NER5 493 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 SMG7Q92540 1137 aaKnown RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 TBATAQ96M53 351 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 NSMCE3Q96MG7 304 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 LINC00597Q9H2U6 94 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 FBXO6Q9NRD1 293 aaPredicted RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 TREX1Q9NSU2 369 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 ZNF358Q9NW07 568 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 KIAA1522Q9P206 1035 aaPredicted RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 DPP7Q9UHL4 492 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 GGT7Q9UJ14 662 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 PHTF1Q9UMS5 762 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 WNT6Q9Y6F9 365 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 A0A096LPK6 155 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 CCDC85CA6NKD9 419 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 PHGDHO43175 533 aaKnown RBP7.11□□□□□ -1.27
SMG1-215ENST00000568239 SMAD6O43541 496 aaKnown RBP7.11□□□□□ -1.27
SMG1-215ENST00000568239 ZMPSTE24O75844 475 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 FGF19O95750 216 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 HNRNPA1P09651 372 aaKnown RBP eCLIP7.11□□□□□ -1.27
SMG1-215ENST00000568239 CEBPBP17676 345 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 CRHR1P34998 444 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 TNK2Q07912 1038 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 UGP2Q16851 508 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 PPP2R2DQ66LE6 453 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 KIAA0930Q6ICG6 404 aaPredicted RBP7.11□□□□□ -1.27
SMG1-215ENST00000568239 ZNF449Q6P9G9 518 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 TIFABQ6ZNK6 161 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 GLT6D1Q7Z4J2 308 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 DCAF4L2Q8NA75 395 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 OR13C4Q8NGS5 318 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 OR13J1Q8NGT2 312 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 PPP1R14CQ8TAE6 165 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 ITFG1Q8TB96 612 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 GDPD5Q8WTR4 605 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 DNAJC1Q96KC8 554 aaKnown RBP7.11□□□□□ -1.27
SMG1-215ENST00000568239 NUDCD1Q96RS6 583 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 TDRD1Q9BXT4 1180 aaKnown RBP7.11□□□□□ -1.27
SMG1-215ENST00000568239 TNKS2Q9H2K2 1166 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 MRM3Q9HC36 420 aaKnown RBP7.11□□□□□ -1.27
SMG1-215ENST00000568239 NSMCE4AQ9NXX6 385 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 PRKAG3Q9UGI9 489 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 TLK1Q9UKI8 766 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 FBXO5Q9UKT4 447 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 PCDHB9Q9Y5E1 797 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 TRANK1O15050 2925 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 A0A0U1RQS6 177 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 AURKAO14965 403 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 LDB2O43679 373 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 GLRA3O75311 464 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 KIAA0754O94854 1291 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 HAUS5O94927 633 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 CR2P20023 1033 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 DDX6P26196 483 aaKnown RBP eCLIP7.11□□□□□ -1.27
SMG1-215ENST00000568239 GABRB3P28472 473 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 GKP32189 559 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 ABL2P42684 1182 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 ETV4P43268 484 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 STK19P49842 368 aaPredicted RBP7.11□□□□□ -1.27
SMG1-215ENST00000568239 SERPINB8P50452 374 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 ARSDP51689 593 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 EPHA5P54756 1037 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 SLC12A2P55011 1212 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 CSE1LP55060 971 aaKnown RBP7.11□□□□□ -1.27
SMG1-215ENST00000568239 OVGP1Q12889 678 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 PTPRRQ15256 657 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 PLEKHG6Q3KR16 790 aa7.11□□□□□ -1.27
SMG1-215ENST00000568239 INO80DQ53TQ3 878 aaPredicted RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms