RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 PRKCGP05129 697 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 PYGMP11217 842 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 CCNB1P14635 433 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 PRLRP16471 622 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 TGM2P21980 687 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 SERPINA4P29622 427 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 MMP12P39900 470 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 MAPK8P45983 427 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 CSNK1EP49674 416 aaKnown RBP9.89□□□□□ -0.83
CLK3-220ENST00000567992 RACK1P63244 317 aaKnown RBP9.89□□□□□ -0.83
CLK3-220ENST00000567992 NIPAL4Q0D2K0 466 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 CCDC15Q0P6D6 951 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 RALGDSQ12967 914 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 TFDP2Q14188 446 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 PDK1Q15118 436 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 UGP2Q16851 508 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 KIF19Q2TAC6 998 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 RALGPS1Q5JS13 557 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 KAZNQ674X7 775 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 NAPEPLDQ6IQ20 393 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 KIAA1161Q6NSJ0 714 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 AADACL2Q6P093 401 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 BRAT1Q6PJG6 821 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 BBS12Q6ZW61 710 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 B4GALNT4Q76KP1 1039 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 CCDC50Q8IVM0 306 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 CNTD1Q8N815 330 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 OR2I1PQ8NGU4 316 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 ARRDC2Q8TBH0 407 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 HES6Q96HZ4 224 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 ZNF830Q96NB3 372 aaPredicted RBP9.89□□□□□ -0.83
CLK3-220ENST00000567992 NUSAP1Q9BXS6 441 aaKnown RBP9.89□□□□□ -0.83
CLK3-220ENST00000567992 MAK16Q9BXY0 300 aaKnown RBP9.89□□□□□ -0.83
CLK3-220ENST00000567992 TSGA10Q9BZW7 698 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 KCNF1Q9H3M0 494 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 PCDH12Q9NPG4 1184 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 AMACRQ9UHK6 382 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 DMTF1Q9Y222 760 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 CA5BQ9Y2D0 317 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 ATP8A1Q9Y2Q0 1164 aa9.89□□□□□ -0.83
CLK3-220ENST00000567992 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.89□□□□□ -0.83
CLK3-220ENST00000567992 KNL1Q8NG31 2342 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.88□□□□□ -0.83
CLK3-220ENST00000567992 C4orf47A7E2U8 309 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 RIOK3O14730 519 aaKnown RBP9.88□□□□□ -0.83
CLK3-220ENST00000567992 TM4SF5O14894 197 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 PPP1R12AO14974 1030 aaPredicted RBP9.88□□□□□ -0.83
CLK3-220ENST00000567992 VILLO15195 856 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 RAD51BO15315 384 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 FZD6O60353 706 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 SOCS5O75159 536 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 PCDH8O95206 1070 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 MMP2P08253 660 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 CCDC175P0C221 793 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 GM2AP17900 193 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 NUDT1P36639 197 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 CTSKP43235 329 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 NR2C2P49116 596 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 SUOXP51687 545 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 RWDD2BP57060 319 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 COPS2P61201 443 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 RPS21P63220 83 aaKnown RBP9.88□□□□□ -0.83
CLK3-220ENST00000567992 SEMG2Q02383 582 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 DSC2Q02487 901 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 BCL2L1Q07817 233 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 TMEM52BQ4KMG9 183 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 SETMARQ53H47 684 aaPredicted RBP9.88□□□□□ -0.83
CLK3-220ENST00000567992 ODF2Q5BJF6 829 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 GCNT7Q6ZNI0 430 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 PEX26Q7Z412 305 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 TTC7BQ86TV6 843 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 PRPF39Q86UA1 669 aaKnown RBP9.88□□□□□ -0.83
CLK3-220ENST00000567992 SYCE1Q8N0S2 351 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 BBS5Q8N3I7 341 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 MINDY1Q8N5J2 469 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 CCNYQ8ND76 341 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 NSMCE1Q8WV22 266 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 KLK6Q92876 244 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 HAUS1Q96CS2 278 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 SERAC1Q96JX3 654 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 KLF6Q99612 283 aaPredicted RBP9.88□□□□□ -0.83
CLK3-220ENST00000567992 SEMA3CQ99985 751 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 C1QTNF2Q9BXJ5 285 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 HEMGNQ9BXL5 484 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 CEP41Q9BYV8 373 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 OSBPL8Q9BZF1 889 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 POLR1EQ9GZS1 481 aaKnown RBP9.88□□□□□ -0.83
CLK3-220ENST00000567992 IL21RQ9HBE5 538 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 FZD3Q9NPG1 666 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 TMEM9BQ9NQ34 198 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 SCUBE2Q9NQ36 999 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 GPR27Q9NS67 375 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 RBM22Q9NW64 420 aaKnown RBP eCLIP9.88□□□□□ -0.83
CLK3-220ENST00000567992 AMFRQ9UKV5 643 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 GUCA1BQ9UMX6 200 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 EFR3BQ9Y2G0 817 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 PPP2R2CQ9Y2T4 447 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 PCDHGC4Q9Y5F7 938 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 SNX11Q9Y5W9 270 aa9.88□□□□□ -0.83
CLK3-220ENST00000567992 BPTFQ12830 3046 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms