RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 EME2A4GXA9 379 aaPredicted RBP18.91■□□□□ 0.62
CLN3-218ENST00000565688 PRAMEF11O60813 436 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 MBD3O95983 291 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 ANXA6P08133 673 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 EIF4A3P38919 411 aaKnown RBP18.91■□□□□ 0.62
CLN3-218ENST00000565688 PEX5P50542 639 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 PCBP4P57723 403 aaKnown RBP18.91■□□□□ 0.62
CLN3-218ENST00000565688 GABREP78334 506 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 PPARDQ03181 441 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 MAMLD1Q13495 774 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 LRRC14Q15048 493 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 UGP2Q16851 508 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 CCDC183Q5T5S1 534 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 FAXCQ5TGI0 409 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 ERAP2Q6P179 960 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 GUSBP11Q6P575 273 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 BRAT1Q6PJG6 821 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 EFL1Q7Z2Z2 1120 aaKnown RBP18.91■□□□□ 0.62
CLN3-218ENST00000565688 RBFAQ8N0V3 343 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 NETO2Q8NC67 525 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 ZNF248Q8NDW4 579 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 NAT6Q93015 286 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 EXOC2Q96KP1 924 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 TUBGCP5Q96RT8 1024 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 SYT11Q9BT88 431 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 LRRC61Q9BV99 259 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 POLR1BQ9H9Y6 1135 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 PDFQ9HBH1 243 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 MBNL1Q9NR56 388 aaKnown RBP18.91■□□□□ 0.62
CLN3-218ENST00000565688 AP4E1Q9UPM8 1137 aa18.91■□□□□ 0.62
CLN3-218ENST00000565688 PTPRQQ9UMZ3 2332 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 ARHGAP42A6NI28 874 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 INSIG1O15503 277 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 GCATO75600 419 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 MPOP05164 745 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 ATP1A3P13637 1013 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 ITIH2P19823 946 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 PSMA2P25787 234 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 ADKP55263 362 aaKnown RBP18.9■□□□□ 0.62
CLN3-218ENST00000565688 ERVPABLB-1P60509 514 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 OGDHQ02218 1023 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 CCDC173Q0VFZ6 552 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 IRF4Q15306 451 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 ISXQ2M1V0 245 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 C6orf132Q5T0Z8 1188 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 ERMARDQ5T6L9 678 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 PLEKHA7Q6IQ23 1121 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 FSTL5Q8N475 847 aaPredicted RBP18.9■□□□□ 0.62
CLN3-218ENST00000565688 AOPEPQ8N6M6 819 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 WDR48Q8TAF3 677 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 SCG3Q8WXD2 468 aaKnown RBP18.9■□□□□ 0.62
CLN3-218ENST00000565688 FCRL3Q96P31 734 aaPredicted RBP18.9■□□□□ 0.62
CLN3-218ENST00000565688 TCEAL2Q9H3H9 227 aaPredicted RBP18.9■□□□□ 0.62
CLN3-218ENST00000565688 PCDH12Q9NPG4 1184 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 TAS2R14Q9NYV8 317 aa18.9■□□□□ 0.62
CLN3-218ENST00000565688 J3KR12 359 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 EEF2KO00418 725 aaKnown RBP18.89■□□□□ 0.61
CLN3-218ENST00000565688 DAPK3O43293 454 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 TCEA3O75764 348 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 PIGNO95427 931 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 TGM2P21980 687 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 HTR1BP28222 390 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 CSNK1DP48730 415 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 TLE3Q04726 772 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 AGERQ15109 404 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 ESRP1Q6NXG1 681 aaKnown RBP18.89■□□□□ 0.61
CLN3-218ENST00000565688 RBM44Q6ZP01 1051 aaKnown RBP18.89■□□□□ 0.61
CLN3-218ENST00000565688 SPACA3Q8IXA5 215 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 SDR16C5Q8N3Y7 309 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 ATL2Q8NHH9 583 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 CELF6Q96J87 481 aaKnown RBP18.89■□□□□ 0.61
CLN3-218ENST00000565688 HIC2Q96JB3 615 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 LGMNQ99538 433 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 DHX35Q9H5Z1 703 aaKnown RBP18.89■□□□□ 0.61
CLN3-218ENST00000565688 ATP13A3Q9H7F0 1226 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 GPATCH2LQ9NWQ4 482 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 RAI2Q9Y5P3 530 aa18.89■□□□□ 0.61
CLN3-218ENST00000565688 TMCO5BA8MYB1 307 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 TK2O00142 265 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 MUSKO15146 869 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 YY2O15391 372 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 PALMO75781 387 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 RNF8O76064 485 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 ALPIP09923 528 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 C6P13671 934 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 TSHRP16473 764 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 SERPINA4P29622 427 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 PAPOLAP51003 745 aaKnown RBP18.88■□□□□ 0.61
CLN3-218ENST00000565688 ZNF135P52742 658 aaPredicted RBP18.88■□□□□ 0.61
CLN3-218ENST00000565688 TYRO3Q06418 890 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 C1orf61Q13536 156 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 ELOCQ15369 112 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 WSCD2Q2TBF2 565 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 LVRNQ6Q4G3 990 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 IGF2-ASQ6U949 168 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 PSTKQ8IV42 348 aaKnown RBP18.88■□□□□ 0.61
CLN3-218ENST00000565688 SLC35F3Q8IY50 421 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 FNIP1Q8TF40 1166 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 SLC39A8Q9C0K1 460 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 RTN4Q9NQC3 1192 aaKnown RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms