RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 CXCR3P49682 368 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 CDH12P55289 794 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 NANOS3P60323 173 aaKnown RBP4.89□□□□□ -1.63
LINC00560-201ENST00000564593 GRIK3Q13003 919 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 MORN5Q5VZ52 161 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 SYCE2Q6PIF2 218 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 SHC4Q6S5L8 630 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 DENND6AQ8IWF6 608 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 GJC3Q8NFK1 279 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 C16orf52Q8NHV5 167 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 NEK9Q8TD19 979 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 NTN5Q8WTR8 489 aaPredicted RBP4.89□□□□□ -1.63
LINC00560-201ENST00000564593 WDFY2Q96P53 400 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 WDR77Q9BQA1 342 aaPredicted RBP4.89□□□□□ -1.63
LINC00560-201ENST00000564593 MXRA8Q9BRK3 442 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 STRA6Q9BX79 667 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 PLEKHA4Q9H4M7 779 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 SYNCQ9H7C4 482 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 ASAH2Q9NR71 780 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 SLC6A13Q9NSD5 602 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 DECR2Q9NUI1 292 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 NSMCE4AQ9NXX6 385 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 HEY2Q9UBP5 337 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 TBC1D29Q9UFV1 150 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 FRMD4BQ9Y2L6 1034 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 SLC45A1Q9Y2W3 748 aa4.89□□□□□ -1.63
LINC00560-201ENST00000564593 GAGE12JA6NER3 117 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 MYO1GB0I1T2 1018 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 KLKB1P03952 638 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 KRT10P13645 584 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 CDAP32320 146 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 HOXD13P35453 343 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 PIP4K2AP48426 406 aaPredicted RBP4.88□□□□□ -1.63
LINC00560-201ENST00000564593 CEBPZQ03701 1054 aaKnown RBP4.88□□□□□ -1.63
LINC00560-201ENST00000564593 FGFBP1Q14512 234 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 TOMM20Q15388 145 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 RBMS2Q15434 407 aaKnown RBP4.88□□□□□ -1.63
LINC00560-201ENST00000564593 EPHA10Q5JZY3 1008 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 PRAMEF19Q5SWL8 479 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 SLC16A12Q6ZSM3 486 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 RBFAQ8N0V3 343 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 WDTC1Q8N5D0 677 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 NANOGP1Q8N7R0 232 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 PIGOQ8TEQ8 1089 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 SCFD2Q8WU76 684 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 POMGNT1Q8WZA1 660 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 NEUROD6Q96NK8 337 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 POLDIP3Q9BY77 421 aaKnown RBP4.88□□□□□ -1.63
LINC00560-201ENST00000564593 NPFFR1Q9GZQ6 430 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 KLHL31Q9H511 634 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 POLR1BQ9H9Y6 1135 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 BPIFA1Q9NP55 256 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 FZD3Q9NPG1 666 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 ANKRD10Q9NXR5 420 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 TUBA8Q9NY65 449 aaPredicted RBP4.88□□□□□ -1.63
LINC00560-201ENST00000564593 AAR2Q9Y312 384 aaKnown RBP4.88□□□□□ -1.63
LINC00560-201ENST00000564593 RABGAP1Q9Y3P9 1069 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 ADAM18Q9Y3Q7 739 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 LSM4Q9Y4Z0 139 aaKnown RBP4.88□□□□□ -1.63
LINC00560-201ENST00000564593 ZNF804BA4D1E1 1349 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 UTYO14607 1347 aa4.88□□□□□ -1.63
LINC00560-201ENST00000564593 TMEM272A0A1B0GTI8 110 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 VILLO15195 856 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 BCAT2O15382 392 aaPredicted RBP4.87□□□□□ -1.63
LINC00560-201ENST00000564593 NDUFB8O95169 186 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 IFNA2P01563 188 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 FGBP02675 491 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 HOXB5P09067 269 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 CHRNB2P17787 502 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 CDH2P19022 906 aaPredicted RBP4.87□□□□□ -1.63
LINC00560-201ENST00000564593 ITGAXP20702 1163 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 HADHAP40939 763 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 ALDH7A1P49419 539 aaKnown RBP4.87□□□□□ -1.63
LINC00560-201ENST00000564593 CSTF3Q12996 717 aaKnown RBP4.87□□□□□ -1.63
LINC00560-201ENST00000564593 ITGADQ13349 1161 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 LPIN1Q14693 890 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 ARHGEF6Q15052 776 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 TCTN1Q2MV58 587 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 ALG11Q2TAA5 492 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 COL28A1Q2UY09 1125 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 ESCO2Q56NI9 601 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 MANEAQ5SRI9 462 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 NUGGCQ68CJ6 796 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 BRINP3Q76B58 766 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 TRAPPC11Q7Z392 1133 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 NOXA1Q86UR1 476 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 ARHGAP12Q8IWW6 846 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 RPAP2Q8IXW5 612 aaPredicted RBP4.87□□□□□ -1.63
LINC00560-201ENST00000564593 SRRM1Q8IYB3 904 aaKnown RBP4.87□□□□□ -1.63
LINC00560-201ENST00000564593 NME8Q8N427 588 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 CCDC89Q8N998 374 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 MPLKIPQ8TAP9 179 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 BICD2Q8TD16 824 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 SLC35F5Q8WV83 523 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 TMEM18Q96B42 140 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 MMABQ96EY8 250 aaPredicted RBP4.87□□□□□ -1.63
LINC00560-201ENST00000564593 RSRC1Q96IZ7 334 aaKnown RBP4.87□□□□□ -1.63
LINC00560-201ENST00000564593 CMTM3Q96MX0 182 aa4.87□□□□□ -1.63
LINC00560-201ENST00000564593 NUDT16L1Q9BRJ7 211 aaKnown RBP4.87□□□□□ -1.63
LINC00560-201ENST00000564593 CCDC68Q9H2F9 335 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms