RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 EME2A4GXA9 379 aaPredicted RBP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 TMEM110-MUSTN1A8MSY1 372 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 DDX3XO00571 662 aaKnown RBP eCLIP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 BUB1BO60566 1050 aaPredicted RBP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 RNF8O76064 485 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 FTLP02792 175 aaPredicted RBP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 PAPOLAP51003 745 aaKnown RBP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 SEMG2Q02383 582 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 NSUN2Q08J23 767 aaKnown RBP eCLIP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 RFTN1Q14699 578 aaPredicted RBP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 KLHL40Q2TBA0 621 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 FIGNQ5HY92 759 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 LRRC73Q5JTD7 316 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 E4F1Q66K89 784 aaPredicted RBP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 KDM7AQ6ZMT4 941 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 RFX8Q6ZV50 586 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 ARHGAP12Q8IWW6 846 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 PHACTR4Q8IZ21 702 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 FGF11Q92914 225 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 GRAMD1AQ96CP6 724 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 DEPDC7Q96QD5 511 aa17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 KCTD15Q96SI1 283 aaPredicted RBP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 DHX35Q9H5Z1 703 aaKnown RBP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 PNMA8BQ9ULN7 279 aaPredicted RBP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 TMCO5BA8MYB1 307 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 LMO7DNF2Z398 122 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 BRINP1O60477 761 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 GCATO75600 419 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 DXOO77932 396 aaKnown RBP17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 PIGNO95427 931 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 MYBL1P10243 752 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 MYF5P13349 255 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 ERCC2P18074 760 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 MIPP30301 263 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 ACTN2P35609 894 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 EIF4A3P38919 411 aaKnown RBP17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 ABCG1P45844 678 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 ACAP1Q15027 740 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 LRRC14Q15048 493 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 TBC1D25Q3MII6 688 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 RBFAQ8N0V3 343 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 TPCN2Q8NHX9 752 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 IFI44Q8TCB0 444 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 LMX1AQ8TE12 382 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 SPOCK2Q92563 424 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 ECHDC3Q96DC8 303 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 CELF6Q96J87 481 aaKnown RBP17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 EXOC2Q96KP1 924 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 NAP1L5Q96NT1 182 aaPredicted RBP17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 IL12RB2Q99665 862 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 LRRC61Q9BV99 259 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 ISCUQ9H1K1 167 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 PCDH12Q9NPG4 1184 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 CNOT8Q9UFF9 292 aaKnown RBP17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 APOBEC3BQ9UH17 382 aaKnown RBP17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 SCINQ9Y6U3 715 aa17.37■□□□□ 0.37
VPS9D1-203ENST00000563798 RRP8O43159 456 aaKnown RBP17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 ATMINO43313 823 aaPredicted RBP17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 PRPSAP2O60256 369 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 LRCH4O75427 683 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 XPAP23025 273 aaPredicted RBP17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 PCK1P35558 622 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 MMP12P39900 470 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 RGRP47804 291 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 ZNF165P49910 485 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 BLKP51451 505 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 IL10RBQ08334 325 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 NR1I3Q14994 352 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 IQCB1Q15051 598 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 IRF4Q15306 451 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 WSCD2Q2TBF2 565 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 DEFB133Q30KQ1 61 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 C6orf132Q5T0Z8 1188 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 ERAP2Q6P179 960 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 IGF2-ASQ6U949 168 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 SRLQ86TD4 932 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 ZSWIM9Q86XI8 627 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 CAMK1DQ8IU85 385 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 LSMEM2Q8N112 164 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 SDR16C5Q8N3Y7 309 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 LZTR1Q8N653 840 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 TRIM11Q96F44 468 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 FUCA2Q9BTY2 467 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 WRAP53Q9BUR4 548 aaKnown RBP17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 SLC13A1Q9BZW2 595 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 TRIM7Q9C029 511 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 TCEAL2Q9H3H9 227 aaPredicted RBP17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 MRPL47Q9HD33 250 aaKnown RBP17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 PCSK1NQ9UHG2 260 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 ATP8A1Q9Y2Q0 1164 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 PCDHB1Q9Y5F3 818 aa17.36■□□□□ 0.37
VPS9D1-203ENST00000563798 LOC400499M0QZD8 3231 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 DAPK3O43293 454 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 PALMO75781 387 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 C6P13671 934 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 ITPKBP27987 946 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 SERPINA4P29622 427 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 LSSP48449 732 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 RPIAP49247 311 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 PPARDQ03181 441 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms